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SCNpilot_cont_1000_p_scaffold_1855_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1855_curated_1
RIFOXYA2_FULL_RIF01_40_8_curated, RIF1, Bacteria

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1..210
DNA (210bp) protein (70aa)
Tax=RIFOXYA2_FULL_RIF01_40_8_curated
SCNpilot_cont_1000_p_scaffold_1855_curated_2
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(207..488)
DNA (282bp) protein (94aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /;
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAX6_THECD
SCNpilot_cont_1000_p_scaffold_1855_curated_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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569..1552
DNA (984bp) protein (328aa)
Cysteine synthase A {ECO:0000313|EMBL:EEF58332.1}; EC=2.5.1.47 {ECO:0000313|EMBL:EEF58332.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cysK; cysteine synthase; K01738 cysteine synthase A [EC:2.5.1.47]
Cysteine synthase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP81_9BACT
SCNpilot_cont_1000_p_scaffold_1855_curated_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1557..2255
DNA (699bp) protein (233aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H9_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EDY18384.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1855_curated_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2269..3066)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D641_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18244.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1855_curated_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3073..3528)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D640_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18243.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1855_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3569..4981)
DNA (1413bp) protein (471aa)
pyridine nucleotide-disulfide oxidoreductase dimerisation region; K00520 mercuric reductase [EC:1.16.1.1]
Pyridine nucleotide-disulphide oxidoreductase dimerisation region n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D639_9BACT
Pyridine nucleotide-disulphide oxidoreductase dimerisation region {ECO:0000313|EMBL:EDY18242.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1855_curated_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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5153..6565
DNA (1413bp) protein (471aa)
Uncharacterized protein (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPX0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58151.1}; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1855_curated_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6562..8121)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D638_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18241.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1855_curated_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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8357..10945
DNA (2589bp) protein (863aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGG8_9BACT
SCNpilot_cont_1000_p_scaffold_1855_curated_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10970..13531
DNA (2562bp) protein (854aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D634_9BACT
SCNpilot_cont_1000_p_scaffold_1855_curated_12
Thermobaculum terrenum, Thermobaculum, Bacteria

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13545..14570
DNA (1026bp) protein (342aa)
Oxidoreductase domain protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CC65_THET1
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACZ42380.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_cont_1000_p_scaffold_1855_curated_13
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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14625..15077
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Mesoflavibacter zeaxanthinifaciens RepID=UPI000255AFC8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ71464.1}; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
SCNpilot_cont_1000_p_scaffold_1855_curated_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(15138..15929)
DNA (792bp) protein (264aa)
Alpha/beta hydrolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAV9_9BACT
Alpha/beta hydrolase {ECO:0000313|EMBL:EDY16431.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
alpha/beta hydrolase
SCNpilot_cont_1000_p_scaffold_1855_curated_15
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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16029..16682
DNA (654bp) protein (218aa)
Transcriptional regulator, TetR family n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SNY8_9DELT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERK90340.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
TetR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1855_curated_16
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16679..17110)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LK54_BURGS
Membrane protein {ECO:0000313|EMBL:KDR39432.1}; Uncharacterized protein {ECO:0000313|EMBL:CDY76963.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1855_curated_17
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18357..19508
DNA (1152bp) protein (384aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3]
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
RNA-splicing ligase RtcB n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IA67_METNO
SCNpilot_cont_1000_p_scaffold_1855_curated_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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20210..21640
DNA (1431bp) protein (477aa)
TROVE domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4H0_9BACT
TROVE domain protein {ECO:0000313|EMBL:EDY18771.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
TROVE domain-containing protein
SCNpilot_cont_1000_p_scaffold_1855_curated_19
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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21832..23094
DNA (1263bp) protein (421aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LH00_SYNFM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK16702.1}; Flags: Precursor;; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
SCNpilot_cont_1000_p_scaffold_1855_curated_20
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(23123..23665)
DNA (543bp) protein (181aa)
Putative xylanase/chitin deacetylase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B2A2_9BACT
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:EIQ01394.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
Displaying 20 items

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