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SCNpilot_cont_1000_p_scaffold_2323_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2323_curated_1
unknown

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comp(3..215)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2323_curated_2
unknown

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535..798
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2323_curated_3
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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1073..1834
DNA (762bp) protein (254aa)
sensor kinase, two-component system, OmpR family; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
histidine kinase, partial n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B50345
Tax=CG_Delta_03
SCNpilot_cont_1000_p_scaffold_2323_curated_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1918..2193
DNA (276bp) protein (92aa)
Histone family protein DNA-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU65_9BACT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EDY22103.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_cont_1000_p_scaffold_2323_curated_5
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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2202..2732
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K0U2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCG93111.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2323_curated_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3386..3559
DNA (174bp) protein (58aa)
Ribosomal protein L34 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXY1_9BACT
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
SCNpilot_cont_1000_p_scaffold_2323_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3672..3938
DNA (267bp) protein (89aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXY0_9BACT
SCNpilot_cont_1000_p_scaffold_2323_curated_8
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3986..4234
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI00036952D3
hypothetical protein; K08998 hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_2323_curated_9
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4235..5986
DNA (1752bp) protein (584aa)
Membrane protein insertase YidC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXX8_9BACT
yidC; preprotein translocase subunit YidC; K03217 preprotein translocase subunit YidC
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_2323_curated_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

5983..6444
DNA (462bp) protein (154aa)
Single-stranded nucleic acid binding R3H domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXX7_9BACT
Single-stranded nucleic acid binding R3H domain protein {ECO:0000313|EMBL:EDY21125.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
jag; jag protein; K06346 spoIIIJ-associated protein
SCNpilot_cont_1000_p_scaffold_2323_curated_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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6473..7354
DNA (882bp) protein (294aa)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDY19158.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EDY19158.1};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D347_9BACT
SCNpilot_cont_1000_p_scaffold_2323_curated_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7357..9378
DNA (2022bp) protein (674aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
UvrD/REP helicase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4R3_9BACT
SCNpilot_cont_1000_p_scaffold_2323_curated_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(9375..9791)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNU9_OPITP
signal peptide
Uncharacterized protein {ECO:0000313|EMBL:ACB75469.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_2323_curated_14
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(9796..10407)
DNA (612bp) protein (204aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D044_9BACT
ErfK/YbiS/YcfS/YnhG family protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_2323_curated_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10522..10797
DNA (276bp) protein (92aa)
Regulatory protein, FmdB family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D045_9BACT
Regulatory protein, FmdB family {ECO:0000313|EMBL:EDY20359.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
regulatory protein, FmdB family
SCNpilot_cont_1000_p_scaffold_2323_curated_16
unknown

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10794..11615
DNA (822bp) protein (274aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2323_curated_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

11791..12933
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D047_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20361.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_2323_curated_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

13121..13555
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUI4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY22222.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2323_curated_19
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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13552..14958
DNA (1407bp) protein (469aa)
peptidase M16 domain-containing protein; K07263 zinc protease [EC:3.4.24.-]
Peptidase M16 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUI5_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Displaying 19 items

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