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SCNpilot_cont_1000_p_scaffold_2663_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2663_curated_1
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..305)
DNA (303bp) protein (101aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_cont_1000_p_scaffold_2663_curated_2
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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433..1014
DNA (582bp) protein (194aa)
membrane protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI0003808A78
dedA family protein; K03975 membrane-associated protein
DedA family protein {ECO:0000313|EMBL:ABC76232.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
SCNpilot_cont_1000_p_scaffold_2663_curated_3
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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1173..2618
DNA (1446bp) protein (482aa)
Ammonium transporter n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSW9_OPITP
ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_2663_curated_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2654..2992
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBE8_9BACT
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EEF62247.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1
SCNpilot_cont_1000_p_scaffold_2663_curated_5
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3201..4679
DNA (1479bp) protein (493aa)
Amino acid transporter n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKC5_CHLTF
Amino acid transporter {ECO:0000313|EMBL:AKD55221.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
amino acid transporter; K03294 basic amino acid/polyamine antiporter, APA family
SCNpilot_cont_1000_p_scaffold_2663_curated_6
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4743..5828)
DNA (1086bp) protein (362aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B6M4_PARDP
Uncharacterized protein {ECO:0000313|EMBL:AJY45753.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
extracellular solute-binding protein
SCNpilot_cont_1000_p_scaffold_2663_curated_7
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(5822..6844)
DNA (1023bp) protein (341aa)
Putative divalent metal ion transporter id=4209778 bin=GWF2_Planctomycetes_42_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
putative Divalent metal ion transporter; K03284 magnesium transporter
Tax=GWF2_Planctomycetes_42_9_curated
SCNpilot_cont_1000_p_scaffold_2663_curated_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6922..8274)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035ED189
Aminotransferase {ECO:0000313|EMBL:EZQ19435.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
class III aminotransferase
SCNpilot_cont_1000_p_scaffold_2663_curated_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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8401..9909
DNA (1509bp) protein (503aa)
Glycosyl transferase family 2 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0R9_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EDY19931.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
group 2 glycosyl transferase
SCNpilot_cont_1000_p_scaffold_2663_curated_10
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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9906..10463
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746130
ErfK/YbiS/YcfS/YnhG family protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_2663_curated_11
Pseudomonas sp. LM12, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10783..11937)
DNA (1155bp) protein (385aa)
TraA n=2 Tax=Pseudomonas syringae pv. savastanoi RepID=D7I757_PSESS
Mobilization protein A (MobA) {ECO:0000313|EMBL:AJW29841.1}; TaxID=1449783 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. LM12.;"
MobA/MobL family protein
SCNpilot_cont_1000_p_scaffold_2663_curated_12
unknown

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comp(12124..12405)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2663_curated_13
unknown

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comp(12579..12866)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2663_curated_14
unknown

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comp(13292..13534)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2663_curated_15
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13626..14360)
DNA (735bp) protein (245aa)
hsdR; type I restriction-modification system restriction subunit (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
DEAD/DEAH box helicase n=1 Tax=Schlesneria paludicola RepID=UPI00029B569F
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
Displaying 15 items

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