ggKbase home page

SCNpilot_cont_1000_p_scaffold_10280_curated

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_10280_curated_1
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2..418
DNA (417bp) protein (139aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" sour
K+-transporting ATPase subunit B; K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
Potassium-transporting ATPase B chain n=1 Tax=Akkermansia sp. CAG:344 RepID=R7DW85_9BACT
SCNpilot_cont_1000_p_scaffold_10280_curated_2
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

423..974
DNA (552bp) protein (184aa)
cation transport ATPase component; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12] id=7722025 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
K+-transporting ATPase subunit C
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
SCNpilot_cont_1000_p_scaffold_10280_curated_3
unknown

Not on your lists

comp(2800..2973)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_10280_curated_4
RBG_13_Chloroflexi_60_9_curated, Chloroflexi, Bacteria

Not on your lists

3293..3577
DNA (285bp) protein (95aa)
kdpD; sensor protein kdpD; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003651CBD
Tax=RBG_13_Chloroflexi_60_9_curated
SCNpilot_cont_1000_p_scaffold_10280_curated_5
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

3574..4263
DNA (690bp) protein (230aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSQ2_9BACT
winged helix family two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCNpilot_cont_1000_p_scaffold_10280_curated_6
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4391..4882
DNA (492bp) protein (164aa)
NrdR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745E16
ATP-cone domain-containing protein; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
SCNpilot_cont_1000_p_scaffold_10280_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

4879..5436
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D973_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16976.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_10280_curated_8
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5433..5768
DNA (336bp) protein (112aa)
Histidine triad (HIT) protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EKC2_CORAD
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
Histidine triad (HIT) protein {ECO:0000313|EMBL:ADE54871.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
SCNpilot_cont_1000_p_scaffold_10280_curated_9
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5813..6157
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WZI4_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI24671.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCNpilot_cont_1000_p_scaffold_10280_curated_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6266..7513)
DNA (1248bp) protein (416aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nuoD; NADH dehydrogenase subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit D n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV06_9BACT
Displaying 10 items

View Taxonomy