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SCNpilot_cont_1000_p_scaffold_1560_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1560_curated_1
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3..860)
DNA (858bp) protein (286aa)
Cna B domain protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VB02_9CYAN
Cna B domain protein
Cna B domain protein {ECO:0000313|EMBL:AFZ04874.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
SCNpilot_cont_1000_p_scaffold_1560_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1030..1620
DNA (591bp) protein (197aa)
transcriptional regulator n=1 Tax=Salinispora arenicola RepID=UPI000367C8DF
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_1000_p_scaffold_1560_curated_3
Pseudoalteromonas rubra, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1655..1942
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B6C3AD
Uncharacterized protein {ECO:0000313|EMBL:KJZ07282.1}; TaxID=43658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas rubra.;"
YCII-like domain-containing protein
SCNpilot_cont_1000_p_scaffold_1560_curated_4
unknown

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comp(1956..2948)
DNA (993bp) protein (331aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1560_curated_5
Alteromonas marina, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3310..4554
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2IX76_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KHT54068.1}; TaxID=203795 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas marina.;"
acyltransferase
SCNpilot_cont_1000_p_scaffold_1560_curated_6
unknown

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4843..5166
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1560_curated_7
unknown

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5163..5654
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1560_curated_8
unknown

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5698..6063
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1560_curated_9
Komagataeibacter intermedius, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6214..6726)
DNA (513bp) protein (171aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1458464 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter intermedius AF2.;"
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI000378830A
shikimate 5-dehydrogenase
SCNpilot_cont_1000_p_scaffold_1560_curated_10
unknown

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comp(7417..8214)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI000311CC4D
SCNpilot_cont_1000_p_scaffold_1560_curated_11
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

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comp(8309..9061)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Vibrio cholerae V51 RepID=A3EJY7_VIBCL
hypothetical protein
Tax=RBG_13_WOR_3_43_14_curated
SCNpilot_cont_1000_p_scaffold_1560_curated_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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9321..10385
DNA (1065bp) protein (355aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
trmU; tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D711_9BACT
SCNpilot_cont_1000_p_scaffold_1560_curated_13
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10402..10713
DNA (312bp) protein (104aa)
CutA1 divalent ion tolerance protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H9J2_ANADF
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein
CutA1 divalent ion tolerance protein {ECO:0000313|EMBL:ABS25388.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
SCNpilot_cont_1000_p_scaffold_1560_curated_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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10710..11975
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174559F
Uncharacterized protein {ECO:0000313|EMBL:ETX03368.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCNpilot_cont_1000_p_scaffold_1560_curated_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(12508..13299)
DNA (792bp) protein (264aa)
ExsB family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0H0_9BACT
ExsB family protein {ECO:0000313|EMBL:EDY19832.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
adenosine nucleotide alpha-hydrolase superfamily protein; K06864 uncharacterized protein
SCNpilot_cont_1000_p_scaffold_1560_curated_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13302..14129)
DNA (828bp) protein (276aa)
Chlorite dismutase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0H2_9BACT
Chlorite dismutase {ECO:0000313|EMBL:EDY19834.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ywfI; heme peroxidase involved in anaerobic stress response; K09162 hypothetical protein
SCNpilot_cont_1000_p_scaffold_1560_curated_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14220..14453
DNA (234bp) protein (78aa)
ferredoxin n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744B70
gloB; Zn-dependent hydrolase, glyoxylase family; K05337 ferredoxin
Uncharacterized protein {ECO:0000313|EMBL:EEF60825.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_cont_1000_p_scaffold_1560_curated_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14535..14900
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0F2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19814.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1560_curated_19
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15134..15730)
DNA (597bp) protein (199aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia sp. H160 RepID=B5WAW3_9BURK
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEA04681.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
LuxR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1560_curated_20
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15727..17547)
DNA (1821bp) protein (607aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
PAS/PAC sensor signal transduction histidine kinase n=2 Tax=Thauera RepID=C4KD46_THASP
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_1000_p_scaffold_1560_curated_21
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17919..19361
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PX48_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EIG52104.1}; Flags: Precursor;; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1560_curated_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19866..20483
DNA (618bp) protein (206aa)
haloacid dehalogenase domain-containing protein hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B81
NUDIX hydrolase {ECO:0000313|EMBL:EEF58357.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_cont_1000_p_scaffold_1560_curated_23
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20545..20898
DNA (354bp) protein (118aa)
haloacid dehalogenase domain-containing protein hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI0003818D3F
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:CDB54490.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia muciniphila CAG:154.;"
Displaying 23 items

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