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SCNpilot_cont_1000_p_scaffold_3011_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3011_curated_1
unknown

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2..565
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3011_curated_2
unknown

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562..1215
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3011_curated_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1221..4562
DNA (3342bp) protein (1114aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI000375D16D
SMC proteins Flexible Hinge Domain.
SMC proteins Flexible Hinge Domain {ECO:0000313|EMBL:CBK98639.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
SCNpilot_cont_1000_p_scaffold_3011_curated_4

Not on your lists

4588..5601
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SS30_PLAL2
Dienelactone hydrolase family {ECO:0000313|EMBL:AIA17183.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3011_curated_5
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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5698..8310
DNA (2613bp) protein (871aa)
Uncharacterized protein n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RAC6_9DELT
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CCO23167.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
SCNpilot_cont_1000_p_scaffold_3011_curated_6
unknown

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8393..8797
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3011_curated_7
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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9102..9383
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYJ1_OPITP
hypothetical protein; K06975
Uncharacterized protein {ECO:0000313|EMBL:ACB77092.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_3011_curated_8
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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9389..10456
DNA (1068bp) protein (356aa)
DNA-directed DNA polymerase; K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EJC6_CORAD
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_3011_curated_9
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10545..11054)
DNA (510bp) protein (170aa)
Copper-containing nitrite reductase (EC:1.7.2.1)
Copper-containing nitrite reductase n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UNC6_RALSL
Putative cytochrome c, monohaem protein {ECO:0000313|EMBL:CBJ40648.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
SCNpilot_cont_1000_p_scaffold_3011_curated_10
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(11051..11698)
DNA (648bp) protein (216aa)
Electron transport protein SCO1/SenC n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BDD8_MEISD
electron transport protein SCO1/SenC; K07152
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ADH64758.1}; Flags: Precursor;; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
SCNpilot_cont_1000_p_scaffold_3011_curated_11
Thermus sp. CCB_US3_UF1, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(11695..12078)
DNA (384bp) protein (128aa)
transporter n=1 Tax=Thermus igniterrae RepID=UPI00037339D5
hypothetical protein; K09796 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV15355.1}; TaxID=1111069 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. CCB_US3_UF1.;"
SCNpilot_cont_1000_p_scaffold_3011_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12242..13132)
DNA (891bp) protein (297aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX01_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD07259.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_p_scaffold_3011_curated_13
unknown

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comp(13188..13958)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI0003829F82
SCNpilot_cont_1000_p_scaffold_3011_curated_14
unknown

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comp(13969..14877)
DNA (909bp) protein (303aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3011_curated_15
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15264..16532
DNA (1269bp) protein (423aa)
sensor histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
Sensor histidine kinase PrrB (RegB) protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S3T2_9DELT
SCNpilot_cont_1000_p_scaffold_3011_curated_16
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16543..17052
DNA (510bp) protein (170aa)
Two-component system, regulatory protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9N8_ACIC5
two-component system, regulatory protein; K15012 two-component system, response regulator RegA
Two-component system, regulatory protein {ECO:0000313|EMBL:ACO32215.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
SCNpilot_cont_1000_p_scaffold_3011_curated_17
unknown

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comp(17349..17765)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3011_curated_18
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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comp(17895..19193)
DNA (1299bp) protein (433aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32); K01596 phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G6V9_CHLAD
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
Displaying 18 items

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