ggKbase home page

scnpilot_expt_750_bf_scaffold_474_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_474_curated_1
unknown

Not on your lists

1..132
DNA (132bp) protein (44aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000376332F
scnpilot_expt_750_bf_scaffold_474_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

143..751
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMA0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14703.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_474_curated_3
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1064..2320
DNA (1257bp) protein (419aa)
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUW6_PEDHD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU05974.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_expt_750_bf_scaffold_474_curated_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2424..4592)
DNA (2169bp) protein (723aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO44614.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00035FE0BC rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_474_curated_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4754..4954
DNA (201bp) protein (67aa)
Dodecin {ECO:0000313|EMBL:KIC91884.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00036A61A1
hypothetical protein
scnpilot_expt_750_bf_scaffold_474_curated_6
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5191..7599)
DNA (2409bp) protein (803aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EB00_RUNSL rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI49193.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_expt_750_bf_scaffold_474_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7780..9228
DNA (1449bp) protein (483aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ7_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW01985.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9357..10556
DNA (1200bp) protein (400aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ8_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW01986.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11030..12469
DNA (1440bp) protein (480aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC95176.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alkyl hydroperoxide reductase rbh
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V5_NIAKG rbh
scnpilot_expt_750_bf_scaffold_474_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12488..14434
DNA (1947bp) protein (649aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036EABFD rbh
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] rbh
PpiC-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:AEW02311.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14523..15119
DNA (597bp) protein (199aa)
Scaffold protein Nfu/NifU rbh
Scaffold protein Nfu/NifU n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCJ1_NIAKG rbh
Scaffold protein Nfu/NifU {ECO:0000313|EMBL:AEW02531.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15270..17906)
DNA (2637bp) protein (879aa)
Matrixin {ECO:0000313|EMBL:KIC93144.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Matrixin rbh
Matrixin n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUP0_SOLCM rbh
scnpilot_expt_750_bf_scaffold_474_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18074..18436
DNA (363bp) protein (121aa)
CopY family transcriptional repressor; K07737 putative transcriptional regulator
Transcriptional repressor, CopY family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP98_NIAKG
Transcriptional repressor, CopY family {ECO:0000313|EMBL:AEV96704.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18458..20038
DNA (1581bp) protein (527aa)
Peptidase M56 BlaR1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNC9_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17535.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M56 BlaR1 rbh
scnpilot_expt_750_bf_scaffold_474_curated_15
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20079..21053
DNA (975bp) protein (325aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YAJ2_9SPHI rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ29112.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_474_curated_16
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21264..22850
DNA (1587bp) protein (529aa)
abc transporter related protein rbh
ABC transporter related protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RQJ6_LEAB4 rbh
ABC transporter related protein {ECO:0000313|EMBL:ADQ16562.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_expt_750_bf_scaffold_474_curated_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23188..23583
DNA (396bp) protein (132aa)
Nucleoside-diphosphate kinase regulator {ECO:0000313|EMBL:GAO44031.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
GreA/GreB family elongation factor n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S9G6_PEDSD
scnpilot_expt_750_bf_scaffold_474_curated_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23774..24097
DNA (324bp) protein (108aa)
Putative ArsR family transcriptional regulator {ECO:0000313|EMBL:GAO43993.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Transcriptional regulator, ArsR family n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JML6_9BACT
putative transcriptional regulator
scnpilot_expt_750_bf_scaffold_474_curated_19
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24104..24583
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037A9B27
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABQ05850.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
scnpilot_expt_750_bf_scaffold_474_curated_20
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24599..25009
DNA (411bp) protein (137aa)
DoxX-like family protein {ECO:0000313|EMBL:KIA93428.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FG20_FLAJ1
scnpilot_expt_750_bf_scaffold_474_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25080..28850)
DNA (3771bp) protein (1257aa)
SNF2-related protein {ECO:0000313|EMBL:AEW02659.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SNF2-related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF39_NIAKG rbh
SNF2-related protein rbh
scnpilot_expt_750_bf_scaffold_474_curated_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28996..29931)
DNA (936bp) protein (312aa)
phosphoesterase PA-phosphatase-like protein rbh
Phosphoesterase PA-phosphatase related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7C1_NIAKG rbh
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:AEW01157.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_23
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29963..30655)
DNA (693bp) protein (231aa)
Phosphoesterase {ECO:0000313|EMBL:KEQ30307.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
membrane-associated phospholipid phosphatase
Membrane-associated phospholipid phosphatase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVB0_SOLCM
scnpilot_expt_750_bf_scaffold_474_curated_24
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30781..31512)
DNA (732bp) protein (244aa)
Probable 2-phosphosulfolactate phosphatase {ECO:0000256|HAMAP-Rule:MF_00490}; EC=3.1.3.71 {ECO:0000256|HAMAP-Rule:MF_00490, ECO:0000256|SAAS:SAAS00015343};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
2-phosphosulfolactate phosphatase; K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71] rbh
2-phosphosulfolactate phosphatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF34_NIAKG rbh
scnpilot_expt_750_bf_scaffold_474_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31651..32124)
DNA (474bp) protein (158aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF33_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEW02653.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_474_curated_26
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32141..33235)
DNA (1095bp) protein (365aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] rbh
Aminomethyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHB8_CHIPD rbh
scnpilot_expt_750_bf_scaffold_474_curated_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33357..33923)
DNA (567bp) protein (189aa)
isoleucine patch superfamily carbonic anhydrase/acetyltransferase rbh
Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFU1_CHIPD rbh
Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein {ECO:0000313|EMBL:ACU57924.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_474_curated_28
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33961..34890)
DNA (930bp) protein (310aa)
Sugar kinase {ECO:0000313|EMBL:KIC91223.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
sugar kinase n=1 Tax=Segetibacter koreensis RepID=UPI000361A34E rbh
PfkB domain-containing protein rbh
scnpilot_expt_750_bf_scaffold_474_curated_29
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

35097..35381
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V621_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EJF09552.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_474_curated_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35433..36656)
DNA (1224bp) protein (408aa)
OmpA/MotB domain-containing protein rbh
OmpA/MotB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDZ0_NIAKG rbh
OmpA/MotB domain protein {ECO:0000313|EMBL:AEW02624.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 39 in total

View Taxonomy