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scnpilot_expt_750_bf_scaffold_232_curated

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_232_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

492..1814
DNA (1323bp) protein (441aa)
beta-lactamase rbh
Beta-lactamase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8I1_NIAKG rbh
Beta-lactamase {ECO:0000313|EMBL:AEW00153.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_2
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2036..2599
DNA (564bp) protein (188aa)
Tax=GWA2_Bacteroidetes_31_9_curated
gme:Gmet_1071 hypothetical protein id=31261 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
hypothetical protein
scnpilot_expt_750_bf_scaffold_232_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3417..4829
DNA (1413bp) protein (471aa)
3-isopropylmalate dehydratase, large subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NJT6_9SPHI rbh
3-isopropylmalate dehydratase large subunit {ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.- {ECO:0000256|SAAS:SAAS00274346};; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00091399};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
3-isopropylmalate dehydratase, large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
scnpilot_expt_750_bf_scaffold_232_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4902..5498
DNA (597bp) protein (199aa)
3-isopropylmalate dehydratase, small subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NJT7_9SPHI rbh
3-isopropylmalate dehydratase {ECO:0000256|SAAS:SAAS00089872}; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00089872};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] rbh
scnpilot_expt_750_bf_scaffold_232_curated_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5500..7071
DNA (1572bp) protein (524aa)
2-isopropylmalate synthase {ECO:0000313|EMBL:KIC90606.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
(R)-citramalate synthase; K09011 D-citramalate synthase [EC:2.3.1.182] rbh
(R)-citramalate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T700_NIAKG rbh
scnpilot_expt_750_bf_scaffold_232_curated_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7260..8330
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T702_NIAKG rbh
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8475..8933)
DNA (459bp) protein (153aa)
NUDIX hydrolase
NUDIX hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFY9_NIAKG
NUDIX hydrolase {ECO:0000313|EMBL:AEW00588.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8953..9891)
DNA (939bp) protein (313aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Mg2 transporter protein CorA family protein; K03284 magnesium transporter rbh
Mg2 transporter protein CorA family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKR6_CHIPD rbh
scnpilot_expt_750_bf_scaffold_232_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9934..10719)
DNA (786bp) protein (262aa)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] rbh
Diaminopimelate epimerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFY7_NIAKG rbh
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10952..11827)
DNA (876bp) protein (292aa)
purine or other phosphorylase family 1; K00757 uridine phosphorylase [EC:2.4.2.3] rbh
Purine or other phosphorylase family 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFY6_NIAKG rbh
Purine or other phosphorylase family 1 {ECO:0000313|EMBL:AEW00585.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_trna_1
unknown

Not on your lists

11921..11991
DNA (71bp)
transferRNA
scnpilot_expt_750_bf_scaffold_232_curated_11
unknown

Not on your lists

12622..12795
DNA (174bp) protein (58aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_232_curated_12
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12828..13223
DNA (396bp) protein (132aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Riemerella anatipestifer RA-CH-1 RepID=J9R839_RIEAN
Uncharacterized protein {ECO:0000313|EMBL:AFR35892.1}; TaxID=1228997 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer RA-CH-1.;"
scnpilot_expt_750_bf_scaffold_232_curated_13
unknown

Not on your lists

13263..13478
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_232_curated_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(13591..14643)
DNA (1053bp) protein (351aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
glycosyl transferase family protein rbh
Glycosyl transferase family 9 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP91_NIAKG rbh
scnpilot_expt_750_bf_scaffold_232_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14686..15921)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FB4B2 rbh
MFS transporter {ECO:0000313|EMBL:KIC89468.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
major facilitator superfamily protein rbh
scnpilot_expt_750_bf_scaffold_232_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15936..16898)
DNA (963bp) protein (321aa)
hypothetical protein rbh
SNARE associated Golgi protein-like protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP89_NIAKG rbh
SNARE associated Golgi protein-like protein {ECO:0000313|EMBL:AEV96695.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17020..18492)
DNA (1473bp) protein (491aa)
sodium:dicarboxylate symporter n=1 Tax=Niabella aurantiaca RepID=UPI0003814CB4 rbh
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:AHF14623.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Proton/glutamate or proton/aspartate symport protein; K11102 proton glutamate symport protein rbh
scnpilot_expt_750_bf_scaffold_232_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18677..20353
DNA (1677bp) protein (559aa)
amino acid permease n=1 Tax=Niabella aurantiaca RepID=UPI000372A903 rbh
Amino acid permease {ECO:0000313|EMBL:AHF14622.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family rbh
scnpilot_expt_750_bf_scaffold_232_curated_19
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20477..21532
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003791AA9
Oxidoreductase {ECO:0000313|EMBL:AKD58168.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
ferredoxin; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
scnpilot_expt_750_bf_scaffold_232_curated_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(21723..22211)
DNA (489bp) protein (163aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
zinc-binding CMP/dCMP deaminase; K01489 cytidine deaminase [EC:3.5.4.5]
CMP/dCMP deaminase zinc-binding n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJS9_CHIPD
scnpilot_expt_750_bf_scaffold_232_curated_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22294..23784)
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372AFB6 rbh
Signal peptidase {ECO:0000313|EMBL:KIC91780.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89] rbh
scnpilot_expt_750_bf_scaffold_232_curated_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23939..24601)
DNA (663bp) protein (221aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKT1_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ACU63841.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_232_curated_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24604..25767)
DNA (1164bp) protein (388aa)
putative two component sigma-54 specific transcriptional regulator rbh
Putative two component, sigma54 specific, transcriptional regulator n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6W5_NIAKG rbh
Putative two component, sigma54 specific, transcriptional regulator {ECO:0000313|EMBL:AEV97968.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_24
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26010..26768
DNA (759bp) protein (253aa)
Short-chain dehydrogenase {ECO:0000313|EMBL:KIC93233.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B6635 rbh
short-chain dehydrogenase/reductase SDR rbh
scnpilot_expt_750_bf_scaffold_232_curated_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26864..27364
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC89519.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9Y4_NIAKG
scnpilot_expt_750_bf_scaffold_232_curated_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27549..28298
DNA (750bp) protein (250aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBZ4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEV99287.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28397..29365
DNA (969bp) protein (323aa)
cytochrome-c peroxidase; K00428 cytochrome c peroxidase [EC:1.11.1.5] rbh
Cytochrome-c peroxidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL44_NIAKG rbh
Cytochrome-c peroxidase {ECO:0000313|EMBL:AEW01885.1}; EC=1.11.1.5 {ECO:0000313|EMBL:AEW01885.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_232_curated_28
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29403..29849
DNA (447bp) protein (149aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSI2_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ACU64431.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_232_curated_29
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29984..30433)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SKD0_9FLAO
Polyketide cyclase {ECO:0000313|EMBL:KGO96696.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
activator of Hsp90 ATPase 1 family protein
Displaying items 1-30 of 93 in total

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