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scnpilot_expt_750_bf_scaffold_501_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_501_curated_1
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..481
DNA (480bp) protein (160aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1K4_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ACU02980.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_expt_750_bf_scaffold_501_curated_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

492..1715
DNA (1224bp) protein (408aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC92913.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7MX13_9BACT rbh
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_501_curated_3
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1833..4559
DNA (2727bp) protein (909aa)
Putative alpha-1,2-mannosidase n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7NR34_9BACT rbh
Putative alpha-1,2-mannosidase {ECO:0000313|EMBL:EMR00969.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
alpha-1,2-mannosidase rbh
scnpilot_expt_750_bf_scaffold_501_curated_4
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4567..5418
DNA (852bp) protein (284aa)
transcriptional regulator/sugar kinase
Transcriptional regulator/sugar kinase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUU5_SOLCM
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:AFD07645.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_expt_750_bf_scaffold_501_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5422..7236)
DNA (1815bp) protein (605aa)
Glycoside hydrolase family 29 (Alpha-L-fucosidase) n=1 Tax=Niabella soli DSM 19437 RepID=H1NK73_9SPHI rbh
Alpha-L-fucosidase {ECO:0000313|EMBL:AHF16990.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
alpha-L-fucosidase rbh
scnpilot_expt_750_bf_scaffold_501_curated_6
unknown

Not on your lists

7520..7744
DNA (225bp) protein (75aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_501_curated_7
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8077..9636)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SBV6_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:AHM63195.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_501_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9712..10413)
DNA (702bp) protein (234aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQC1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEW02135.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_501_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10572..13178)
DNA (2607bp) protein (869aa)
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA mismatch repair protein MutS n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI79_NIAKG rbh
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS rbh
scnpilot_expt_750_bf_scaffold_501_curated_10
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13262..14155)
DNA (894bp) protein (298aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R5Q5_PIRSD rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB17237.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
scnpilot_expt_750_bf_scaffold_501_curated_11
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14239..16281)
DNA (2043bp) protein (681aa)
Uncharacterized protein {ECO:0000313|EMBL:ETZ22084.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
Putative large, multifunctional secreted protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZYB7_9BACT rbh
blue (type 1) copper domain protein rbh
scnpilot_expt_750_bf_scaffold_501_curated_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16294..17718)
DNA (1425bp) protein (475aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIB6_CHIPD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU63678.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_501_curated_13
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18676..21216
DNA (2541bp) protein (847aa)
TonB-dependent receptor {ECO:0000313|EMBL:ADZ81596.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
TonB-dependent receptor n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CCH7_SPHS2 rbh
TonB-dependent receptor rbh
scnpilot_expt_750_bf_scaffold_501_curated_14
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21527..22375)
DNA (849bp) protein (283aa)
Uncharacterized protein {ECO:0000313|EMBL:CEA15142.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003829ABE
hypothetical protein
scnpilot_expt_750_bf_scaffold_501_curated_15
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22555..25497)
DNA (2943bp) protein (981aa)
Uncharacterized protein id=3524130 bin=GWC2_Bacteroidetes_40_22 species=Bacteroides fragilis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_40_15_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_501_curated_16

Not on your lists

comp(25561..27165)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_493 RepID=L7W1K0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC72440.1}; TaxID=1256577 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_493.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_501_curated_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27250..27756)
DNA (507bp) protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO43527.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUU3_DYAFD
scnpilot_expt_750_bf_scaffold_501_curated_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27781..29583)
DNA (1803bp) protein (601aa)
RagB/SusD domain-containing protein rbh
RagB/SusD domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUU4_DYAFD rbh
RagB/SusD domain protein {ECO:0000313|EMBL:ACT93081.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_expt_750_bf_scaffold_501_curated_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29608..33015)
DNA (3408bp) protein (1136aa)
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO43525.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TonB-dependent receptor plug n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUU5_DYAFD rbh
TonB-dependent receptor plug rbh
scnpilot_expt_750_bf_scaffold_501_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33168..34355)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037BDF85
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99041.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_501_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34479..35090)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036C7CA8
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV99964.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_501_curated_22
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35505..36233
DNA (729bp) protein (243aa)
putative xylanase/chitin deacetylase
Putative xylanase/chitin deacetylase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KRT5_SOLCM
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:AFD07723.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_expt_750_bf_scaffold_501_curated_23
unknown

Not on your lists

comp(36203..36394)
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_501_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36420..37244
DNA (825bp) protein (275aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TD18_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEV98250.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_501_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37294..37671
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNE1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17528.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_expt_750_bf_scaffold_501_curated_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37813..38256
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003617AE9
heat shock protein Hsp20; K13993 HSP20 family protein
Heat shock protein Hsp20 {ECO:0000313|EMBL:AEV98242.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_501_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38465..39523)
DNA (1059bp) protein (353aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Niabella soli DSM 19437 RepID=H1NNE3_9SPHI rbh
Transcriptional regulator {ECO:0000313|EMBL:AHF15300.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Crp/Fnr family transcriptional regulator rbh
scnpilot_expt_750_bf_scaffold_501_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39501..41117)
DNA (1617bp) protein (539aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NNE4_9SPHI rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PAS/PAC sensor signal transduction histidine kinase rbh
scnpilot_expt_750_bf_scaffold_501_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(41296..43704)
DNA (2409bp) protein (803aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphoenolpyruvate synthase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQD0_SOLCM rbh
phosphoenolpyruvate synthase rbh
scnpilot_expt_750_bf_scaffold_501_curated_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43722..44609)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E2DE7
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:AEW02643.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 33 in total

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