ggKbase home page

scnpilot_expt_750_bf_scaffold_217_curated

Search features with annotation key words

Displaying items 1-30 of 472 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_217_curated_1
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..374
DNA (372bp) protein (124aa)
RHS repeat-associated core domain protein-containing protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3BYY3_9FLAO
RHS repeat-associated core domain protein-containing protein {ECO:0000313|EMBL:EJL60664.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
scnpilot_expt_750_bf_scaffold_217_curated_2
unknown

Not on your lists

382..903
DNA (522bp) protein (174aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_217_curated_3
unknown

Not on your lists

1098..1343
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_217_curated_trna_3
unknown

Not on your lists

comp(2296..2379)
DNA (84bp)
transferRNA
scnpilot_expt_750_bf_scaffold_217_curated_4
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2582..3322)
DNA (741bp) protein (247aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
peptidylprolyl isomerase n=1 Tax=Pedobacter agri RepID=UPI00029AD100
peptidyl-prolyl isomerase (EC:5.2.1.8); K03773 FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
scnpilot_expt_750_bf_scaffold_217_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3349..4113)
DNA (765bp) protein (255aa)
phosphonate-transporting ATPase; K09687 antibiotic transport system ATP-binding protein rbh
Phosphonate-transporting ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFL4_NIAKG rbh
Phosphonate-transporting ATPase {ECO:0000313|EMBL:AEV98445.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEV98445.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4208..5470
DNA (1263bp) protein (421aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4] rbh
Aspartokinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGK6_NIAKG rbh
scnpilot_expt_750_bf_scaffold_217_curated_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5935..6180)
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YB75_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30601.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_217_curated_8
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6288..6827)
DNA (540bp) protein (180aa)
Polyketide cyclase {ECO:0000313|EMBL:EZH75966.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
polyketide cyclase n=1 Tax=Gillisia marina RepID=UPI00029A5E5C
polyketide cyclase/dehydrase
scnpilot_expt_750_bf_scaffold_217_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6894..7406)
DNA (513bp) protein (171aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQC5_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEW02139.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7827..8411)
DNA (585bp) protein (195aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCC3_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ACU59506.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_217_curated_11
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8751..9785)
DNA (1035bp) protein (345aa)
Putative uncharacterized protein id=4507283 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes rbh
Tax=GWA2_Bacteroidetes_32_17_curated
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_217_curated_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9935..10492)
DNA (558bp) protein (186aa)
NUDIX hydrolase
NUDIX hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFL2_NIAKG
NUDIX hydrolase {ECO:0000313|EMBL:AEV98443.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10515..11039)
DNA (525bp) protein (175aa)
Metal-dependent hydrolase {ECO:0000313|EMBL:KIC95056.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
metal-dependent hydrolase
Metal-dependent hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFL3_NIAKG
scnpilot_expt_750_bf_scaffold_217_curated_14
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11132..12475)
DNA (1344bp) protein (448aa)
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYY2_PEDHD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU02464.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_expt_750_bf_scaffold_217_curated_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12478..13455)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000372F450 rbh
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:AEV98361.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13457..14683)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036224E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98360.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14680..15564)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035DAD25
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98359.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15557..16528)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037BD9DA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEV98358.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16609..17418
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000375F83F
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:AEV98357.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_20

Not on your lists

comp(17419..18270)
DNA (852bp) protein (284aa)
Lipase n=1 Tax=uncultured bacterium RepID=C6L860_9BACT
Lipase {ECO:0000313|EMBL:BAH86065.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
esterase/lipase
scnpilot_expt_750_bf_scaffold_217_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18589..20595
DNA (2007bp) protein (669aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGM1_NIAKG rbh
1,4-alpha-glucan-branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] rbh
scnpilot_expt_750_bf_scaffold_217_curated_22
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20812..22011
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZSQ1_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EON77073.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_217_curated_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22090..23331
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000371138E rbh
Proline dehydrogenase {ECO:0000313|EMBL:KIC93181.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
L-proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] rbh
scnpilot_expt_750_bf_scaffold_217_curated_24
unknown

Not on your lists

23532..24170
DNA (639bp) protein (213aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_217_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24685..25341
DNA (657bp) protein (219aa)
methyltransferase small
tRNA1(Val) (adenine(37)-N6)-methyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDC3_NIAKG
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_217_curated_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25348..26547)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003625391 rbh
Alanine dehydrogenase {ECO:0000313|EMBL:AHF15275.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
alanine dehydrogenase rbh
scnpilot_expt_750_bf_scaffold_217_curated_trna_1
unknown

Not on your lists

26766..26849
DNA (84bp)
transferRNA
scnpilot_expt_750_bf_scaffold_217_curated_27
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27031..27717)
DNA (687bp) protein (229aa)
Thiol:disulfide interchange protein {ECO:0000313|EMBL:KGO08680.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
thiol:disulfide interchange protein n=1 Tax=Nafulsella turpanensis RepID=UPI000346C35E
thiol:disulfide interchange protein
scnpilot_expt_750_bf_scaffold_217_curated_28
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27714..28076)
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KGO08681.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
copper chaperone id=12556458 bin=CNBR_ACIDO species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
copper chaperone
Displaying items 1-30 of 472 in total

View Taxonomy