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scnpilot_expt_750_bf_scaffold_292_curated

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Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_292_curated_1
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(144..1379)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037811F6
Tax=GWF2_Bacteroidetes_40_14_curated
anti-FecI sigma factor FecR
scnpilot_expt_750_bf_scaffold_292_curated_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1458..2057)
DNA (600bp) protein (200aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC95801.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6E9D0_9SPHI
RNA polymerase sigma-70 factor
scnpilot_expt_750_bf_scaffold_292_curated_3
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2191..3087)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B1D8E rbh
LmbE family protein rbh
LmbE family protein {ECO:0000313|EMBL:AEL26166.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_expt_750_bf_scaffold_292_curated_4
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3237..4742)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VBL3_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR67366.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_292_curated_5
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4766..7903)
DNA (3138bp) protein (1046aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036A70DA rbh
TonB-dependent receptor {ECO:0000313|EMBL:EPR67367.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
TonB-dependent receptor plug
scnpilot_expt_750_bf_scaffold_292_curated_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8537..9901)
DNA (1365bp) protein (455aa)
Alpha-N-acetylgalactosaminidase rbh
Alpha-N-acetylgalactosaminidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TR04_NIAKG rbh
Alpha-N-acetylgalactosaminidase {ECO:0000313|EMBL:AEV97903.1}; EC=3.2.1.49 {ECO:0000313|EMBL:AEV97903.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_7
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9922..12120)
DNA (2199bp) protein (733aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000382320A rbh
Tax=GWA2_Bacteroidetes_40_15_curated
glycoside hydrolase 20
scnpilot_expt_750_bf_scaffold_292_curated_8
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12466..13590)
DNA (1125bp) protein (375aa)
id=3216089 bin=GWC2_Bacteroidetes_40_22 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes rbh
Tax=GWA2_Bacteroidetes_40_15_curated
scnpilot_expt_750_bf_scaffold_292_curated_9
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(13612..14079)
DNA (468bp) protein (156aa)
Tax=RBG_13_Planctomycetes_62_9_curated
id=3702895 bin=GWF2_Bacteroidetes_42_66 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
scnpilot_expt_750_bf_scaffold_292_curated_10
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(14061..14525)
DNA (465bp) protein (155aa)
Tax=RBG_16_Planctomycetes_55_9_curated
scnpilot_expt_750_bf_scaffold_292_curated_11
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14533..15834)
DNA (1302bp) protein (434aa)
Glucose/galactose transporter {ECO:0000313|EMBL:KGE14864.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
Major facilitator transporter n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MLH8_9SPHI rbh
glucose/galactose transporter rbh
scnpilot_expt_750_bf_scaffold_292_curated_12
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15933..16916)
DNA (984bp) protein (328aa)
Aminotransferase class I and II n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GPL5_9BACT
Aminotransferase class I and II {ECO:0000313|EMBL:CCH55843.1}; EC=2.3.1.29 {ECO:0000313|EMBL:CCH55843.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
aminotransferase class I and II
scnpilot_expt_750_bf_scaffold_292_curated_13
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(16922..17536)
DNA (615bp) protein (205aa)
Peptidase M20 {ECO:0000313|EMBL:KIF28154.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
hypothetical protein n=1 Tax=Algicola sagamiensis RepID=UPI00037047DB
amidohydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
scnpilot_expt_750_bf_scaffold_292_curated_14
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(17545..18369)
DNA (825bp) protein (275aa)
Peptidase M20 {ECO:0000313|EMBL:KIF28154.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
amidohydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KSX6_HALH1
scnpilot_expt_750_bf_scaffold_292_curated_15
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18395..19612)
DNA (1218bp) protein (406aa)
Tax=RBG_16_Planctomycetes_64_12_curated
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000363F02E
hypothetical protein
scnpilot_expt_750_bf_scaffold_292_curated_16
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19615..20940)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003820919 rbh
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACU03352.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_expt_750_bf_scaffold_292_curated_17
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20951..21592)
DNA (642bp) protein (214aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIM7_SPILD
Uncharacterized protein {ECO:0000313|EMBL:ADB39953.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_expt_750_bf_scaffold_292_curated_18
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

21848..22627
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003690F50 rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EHO42444.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
DeoR family transcriptional regulator; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor
scnpilot_expt_750_bf_scaffold_292_curated_19
Crocosphaera watsonii, Crocosphaera, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

22897..23094
DNA (198bp) protein (66aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Crocosphaera watsonii WH 0401 RepID=T2JAM2_CROWT
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=423474 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Crocosphaera.;" source="Crocosphaera watsonii WH 8502.;"
scnpilot_expt_750_bf_scaffold_292_curated_20
Chryseobacterium solincola, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23196..25295
DNA (2100bp) protein (700aa)
DNA ligase {ECO:0000313|EMBL:KIA83653.1}; TaxID=510955 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium solincola.;"
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
ATP-dependent DNA ligase n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X4K9_FLAB3 rbh
scnpilot_expt_750_bf_scaffold_292_curated_21
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25465..25620
DNA (156bp) protein (52aa)
Uncharacterized protein {ECO:0000313|EMBL:ESY72707.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TN98_NIAKG
scnpilot_expt_750_bf_scaffold_292_curated_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25725..26060
DNA (336bp) protein (112aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBT3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEV98215.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


comp(26207..27670)
DNA (1464bp) protein (488aa)
glycyl-tRNA synthetease n=1 Tax=Segetibacter koreensis RepID=UPI0003661282 rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] rbh
scnpilot_expt_750_bf_scaffold_292_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27831..28172)
DNA (342bp) protein (114aa)
translation initiation factor SUI1; K03113 translation initiation factor 1
Translation initiation factor SUI1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMR7_NIAKG
Translation initiation factor SUI1 {ECO:0000313|EMBL:AEW03088.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28184..29038)
DNA (855bp) protein (285aa)
nicotinate-nucleotide pyrophosphorylase; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] rbh
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMR6_NIAKG rbh
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) {ECO:0000313|EMBL:AEW03087.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AEW03087.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_26
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29705..31054)
DNA (1350bp) protein (450aa)
Oxidoreductase, FAD-binding, putative n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHM2_9DELT rbh
Oxidoreductase, FAD-binding, putative {ECO:0000313|EMBL:EDM74646.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
FAD linked oxidase domain-containing protein rbh
scnpilot_expt_750_bf_scaffold_292_curated_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31098..32432)
DNA (1335bp) protein (445aa)
glycerate kinase; K00050 hydroxypyruvate reductase [EC:1.1.1.81] rbh
Glycerate kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCU3_NIAKG rbh
Glycerate kinase {ECO:0000313|EMBL:AEW03547.1}; EC=2.7.1.31 {ECO:0000313|EMBL:AEW03547.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32554..34965
DNA (2412bp) protein (804aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCU2_NIAKG rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:AEW03546.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35067..35321)
DNA (255bp) protein (85aa)
ATP synthase F1 subcomplex subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase F1 subcomplex epsilon subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TID3_NIAKG
ATP synthase F1 subcomplex epsilon subunit {ECO:0000313|EMBL:AEW01749.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_292_curated_30
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35339..36838)
DNA (1500bp) protein (500aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ATP synthase F1 subcomplex subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] rbh
ATP synthase subunit beta n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TID4_NIAKG rbh
Displaying items 1-30 of 92 in total

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