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SCNpilot_cont_300_bf_scaffold_3976_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3976_curated_1
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..488)
DNA (486bp) protein (162aa)
PREDICTED: hippocampus abundant transcript-like protein 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C175A1
Arabinose efflux permease family protein {ECO:0000313|EMBL:ENZ82993.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
major facilitator superfamily protein; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_cont_300_bf_scaffold_3976_curated_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(554..1486)
DNA (933bp) protein (311aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Aldo/keto reductase n=1 Tax=Burkholderia sp. SJ98 RepID=K8QXJ9_9BURK
aldo/keto reductase
SCNpilot_cont_300_bf_scaffold_3976_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1486..2817)
DNA (1332bp) protein (444aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y8D3_SORCE rbh
SCNpilot_cont_300_bf_scaffold_3976_curated_4
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2970..3380)
DNA (411bp) protein (137aa)
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=RL17_CAUCN
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; TaxID=565050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain NA1000 / CB15N).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_5
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3537..4553)
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit alpha n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=RPOA_CAUCN rbh
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_6
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4626..5018)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Caulobacter crescentus OR37 RepID=R0D2Y8_CAUCE
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_cont_300_bf_scaffold_3976_curated_7
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5028..5396)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PWU9_9CAUL
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_cont_300_bf_scaffold_3976_curated_8
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5601..6107)
DNA (507bp) protein (169aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
adenylate kinase, partial n=2 Tax=Caulobacter RepID=UPI00035D29DB
adk; adenylate kinase (EC:2.7.4.3 2.7.4.6); K00939 adenylate kinase [EC:2.7.4.3]
SCNpilot_cont_300_bf_scaffold_3976_curated_9
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6142..7494)
DNA (1353bp) protein (451aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
Protein translocase subunit SecY n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2E2_CAUSK rbh
SCNpilot_cont_300_bf_scaffold_3976_curated_10
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7601..8083)
DNA (483bp) protein (161aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RL15_PHEZH
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8206..8388)
DNA (183bp) protein (61aa)
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4QDY4_9CAUL
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_3976_curated_12
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8394..8996)
DNA (603bp) protein (201aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 rbh
30S ribosomal protein S5 n=1 Tax=Caulobacter crescentus OR37 RepID=R0EPN0_CAUCE rbh
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=565050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain NA1000 / CB15N).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8983..9324)
DNA (342bp) protein (114aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 n=1 Tax=Caulobacter sp. AP07 RepID=J2QBY1_9CAUL
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_3976_curated_14
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9327..9860)
DNA (534bp) protein (178aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFZ3_CAUST
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_15
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9862..10260)
DNA (399bp) protein (133aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
30S ribosomal protein S8 n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=RS8_CAUCN
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10274..10579)
DNA (306bp) protein (102aa)
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
30S ribosomal protein S14 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFZ1_CAUST
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_3976_curated_17
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10598..11158)
DNA (561bp) protein (187aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
50S ribosomal protein L5 n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00035C7A98 rbh
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 rbh
SCNpilot_cont_300_bf_scaffold_3976_curated_18

Not on your lists


comp(11151..11465)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Caulobacter crescentus OR37 RepID=R0EC09_CAUCE
Marine sediment metagenome DNA, contig: S03H2_S10913 {ECO:0000313|EMBL:GAH73262.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_cont_300_bf_scaffold_3976_curated_19
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11465..11704)
DNA (240bp) protein (80aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RL14_PHEZH
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Displaying 19 items

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