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SCNpilot_cont_300_bf_scaffold_3584_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3584_curated_1
unknown

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comp(2..121)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3584_curated_2
Sordaria macrospora, Sordaria, Sordariales, Sordariomycetidae, Ascomycota, Fungi

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comp(184..675)
DNA (492bp) protein (164aa)
hypothetical protein
WGS project CABT00000000 data, contig 2.368 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) RepID=F7WCX9_SORMK
WGS project CABT00000000 data, contig 2.368 {ECO:0000313|EMBL:CCC14666.1}; TaxID=771870 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Sordaria.;" source="Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) /; K-hell).;"
SCNpilot_cont_300_bf_scaffold_3584_curated_3
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(692..1387)
DNA (696bp) protein (232aa)
haloacid dehalogenase n=1 Tax=Rhizobium loti RepID=UPI00037AA8F5 rbh
2-haloalkanoic acid dehalogenase {ECO:0000313|EMBL:CDX21800.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
2-haloalkanoic acid dehalogenase; K07025 putative hydrolase of the HAD superfamily rbh
SCNpilot_cont_300_bf_scaffold_3584_curated_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1374..2756)
DNA (1383bp) protein (461aa)
BioA protein {ECO:0000313|EMBL:BAQ45769.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B54F42 rbh
aminotransferase class-III rbh
SCNpilot_cont_300_bf_scaffold_3584_curated_5
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2971..4467
DNA (1497bp) protein (499aa)
UPI0003D61079 related cluster n=1 Tax=unknown RepID=UPI0003D61079 rbh
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ETI59080.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
iolA; malonate-semialdehyde dehydrogenase IolA; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] rbh
SCNpilot_cont_300_bf_scaffold_3584_curated_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4597..5460
DNA (864bp) protein (288aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
cytochrome c oxidase subunit I rbh
Cytochrome c oxidase subunit I n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8U6_PHEZH rbh
SCNpilot_cont_300_bf_scaffold_3584_curated_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(5483..6424)
DNA (942bp) protein (314aa)
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AHG89460.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00038117F9
xylose isomerase domain-containing protein
SCNpilot_cont_300_bf_scaffold_3584_curated_8
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6491..6910)
DNA (420bp) protein (140aa)
pyrrolo-quinoline quinone
Pyrrolo-quinoline quinone n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R5Y9_PELHB
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:AEQ51104.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_300_bf_scaffold_3584_curated_9
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7244..9373
DNA (2130bp) protein (710aa)
Membrane-bound dehydrogenase domain protein rbh
Membrane-bound dehydrogenase domain protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F540_KETVY rbh
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:ADO44084.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_cont_300_bf_scaffold_3584_curated_10
unknown

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comp(9808..9918)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3584_curated_11
unknown

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comp(10063..10215)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3584_curated_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10444..11037
DNA (594bp) protein (198aa)
MFS transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488632
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ68245.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_3584_curated_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11106..11417
DNA (312bp) protein (104aa)
oxidoreductase domain-containing protein
Oxidoreductase domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V7H8_SPHWW
Oxidoreductase domain protein {ECO:0000313|EMBL:ABQ68244.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 13 items

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