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SCNpilot_cont_300_bf_scaffold_1947_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1947_curated_1
Austwickia chelonae, Austwickia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..164)
DNA (162bp) protein (54aa)
Pantothenate synthetase n=1 Tax=Austwickia chelonae NBRC 105200 RepID=K6VP79_9MICO
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094332}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094309};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094320}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1184607 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Austwickia.;" source="Austwickia chelonae NBRC 105200.;"
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
SCNpilot_cont_300_bf_scaffold_1947_curated_2
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(172..381)
DNA (210bp) protein (70aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=PANB_GLUDA
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156};; Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; Short=KPHMT {ECO:0000255|HAMAP-Rule:MF_00156};; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_3
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1050..1421
DNA (372bp) protein (124aa)
aspartate 1-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RPD8_ASTEC
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1418..2647
DNA (1230bp) protein (410aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Phosphopantothenoylcysteine decarboxylase ,Phosphopantothenate-cysteine ligase n=1 Tax=Caulobacter crescentus OR37 RepID=R0D329_CAUCE rbh
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] rbh
SCNpilot_cont_300_bf_scaffold_1947_curated_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2644..3333)
DNA (690bp) protein (230aa)
pantothenate kinase (EC:2.7.1.33)
Pantothenate kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7L9_9SPHN
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1947_curated_6
Trichodesmium erythraeum, Trichodesmium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(3339..4352)
DNA (1014bp) protein (338aa)
glycosyl transferase family protein
Glycosyl transferase, family 2 n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q115P5_TRIEI
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABG50779.1}; TaxID=203124 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.;" source="Trichodesmium erythraeum (strain IMS101).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_7
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4391..6826)
DNA (2436bp) protein (812aa)
Zinc finger-domain-containing protein
MJ0042 family finger-like protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHX6_ANADF
MJ0042 family finger-like protein {ECO:0000313|EMBL:ABS28322.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6942..7220)
DNA (279bp) protein (93aa)
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9C7_CAUSK
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ABZ74302.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7463..8173
DNA (711bp) protein (237aa)
3-oxoacid CoA-transferase, A subunit n=1 Tax=Caulobacter sp. AP07 RepID=J3AGD0_9CAUL rbh
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:EJL30819.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] rbh
SCNpilot_cont_300_bf_scaffold_1947_curated_10
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8177..8824
DNA (648bp) protein (216aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] rbh
3-oxoacid CoA-transferase, B subunit n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV84_CAUSK rbh
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:ABZ72974.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ABZ72974.1};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8821..9537
DNA (717bp) protein (239aa)
protocatechuate 3,4-dioxygenase subunit beta (EC:1.13.11.3); K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] rbh
Protocatechuate 3,4-dioxygenase beta chain n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GZG7_CAUCN rbh
Protocatechuate 3,4-dioxygenase, beta subunit {ECO:0000313|EMBL:AAK24379.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_12
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9530..10189
DNA (660bp) protein (220aa)
Protocatechuate 3,4-dioxygenase, alpha subunit n=1 Tax=Caulobacter sp. AP07 RepID=J2H5X9_9CAUL rbh
Protocatechuate 3,4-dioxygenase, alpha subunit {ECO:0000313|EMBL:EJL30823.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
protocatechuate 3,4-dioxygenase subunit alpha (EC:1.13.11.3); K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
SCNpilot_cont_300_bf_scaffold_1947_curated_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10210..11367
DNA (1158bp) protein (386aa)
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Caulobacter sp. AP07 RepID=J3AGD4_9CAUL rbh
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:EJL30824.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
3-carboxy-cis,cis-muconate cycloisomerase; K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] rbh
SCNpilot_cont_300_bf_scaffold_1947_curated_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11367..12560
DNA (1194bp) protein (398aa)
3-oxoadipate enol-lactonase; K14727 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44] rbh
3-oxoadipate enol-lactonase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV89_CAUSK rbh
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:ABZ72979.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12557..13756
DNA (1200bp) protein (400aa)
Beta-ketoadipyl-CoA thiolase {ECO:0000313|EMBL:GAO38720.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
UPI0003CFDDA4 related cluster n=1 Tax=unknown RepID=UPI0003CFDDA4 rbh
beta-ketoadipyl CoA thiolase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
SCNpilot_cont_300_bf_scaffold_1947_curated_16
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13871..14035)
DNA (165bp) protein (55aa)
transcriptional regulator
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98I74_RHILO
Transcriptional regulator {ECO:0000313|EMBL:BAB49642.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14862..15191
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM19_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25011.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1947_curated_18
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15188..15976
DNA (789bp) protein (263aa)
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VK27_CAUST rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADG10850.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16150..16713)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE52356.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7L2_NOVAD
SCNpilot_cont_300_bf_scaffold_1947_curated_20
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16713..17837)
DNA (1125bp) protein (375aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Homocysteine methyltransferase protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2FT74_9GAMM rbh
hypothetical protein; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
SCNpilot_cont_300_bf_scaffold_1947_curated_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17894..18391)
DNA (498bp) protein (166aa)
paaG; enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P2L1_AZOS1
Enoyl-CoA hydratase {ECO:0000313|EMBL:BAI75031.1}; EC=4.2.1.17 {ECO:0000313|EMBL:BAI75031.1};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_300_bf_scaffold_1947_curated_22
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18750..18959)
DNA (210bp) protein (70aa)
aldehyde dehydrogenase
Vanillin dehydrogenase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GZG1_CAUCN
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABZ70263.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
Displaying 22 items

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