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SCNpilot_cont_300_bf_scaffold_1461_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1461_curated_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..646)
DNA (645bp) protein (215aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Amidase-related protein id=1997013 bin=GWD2_Deltaproteobacteria_55_8 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidase-like protein
SCNpilot_cont_300_bf_scaffold_1461_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(721..3900)
DNA (3180bp) protein (1060aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP71380.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8SF22_9SPHN rbh
TonB-dependent receptor rbh
SCNpilot_cont_300_bf_scaffold_1461_curated_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4078..4371)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037325B5
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:EJL36099.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_1461_curated_4
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4905..5522)
DNA (618bp) protein (206aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Caulobacter sp. AP07 RepID=J2HK75_9CAUL
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL36098.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1461_curated_5
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5759..6358)
DNA (600bp) protein (200aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VF48_CAUST
Uncharacterized protein {ECO:0000313|EMBL:ADG09466.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_6
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6479..6706)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003794D79
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ73529.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6767..7768)
DNA (1002bp) protein (334aa)
cobalt chelatase, pCobS small subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2] rbh
Cobalt chelatase, pCobS small subunit n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8E3_CAUSK rbh
Cobalt chelatase, pCobS small subunit {ECO:0000313|EMBL:ABZ69844.1}; EC=6.6.1.2 {ECO:0000313|EMBL:ABZ69844.1};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8046..8789
DNA (744bp) protein (248aa)
PA-phosphatase-like phosphoesterase
Phosphoesterase PA-phosphatase related n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8E5_CAUSK
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:ABZ69846.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_9
unknown

Not on your lists

comp(8799..9701)
DNA (903bp) protein (301aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1461_curated_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(9773..11107)
DNA (1335bp) protein (445aa)
mandelate racemase/muconate lactonizing protein rbh
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020Z3_SOLUE rbh
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:ABJ84496.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11208..11876)
DNA (669bp) protein (223aa)
molecular chaperones (DnaJ family)
Molecular chaperones (DnaJ family) n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H333_CAUCN
DnaJ-related protein {ECO:0000313|EMBL:AAK24972.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11925..12200
DNA (276bp) protein (92aa)
stress-induced morphogen; K05527 BolA protein
Stress-induced morphogen n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG27_PHEZH
Stress-induced morphogen {ECO:0000313|EMBL:ACG77151.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_13
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12338..13603)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A84A8 rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
RNA polymerase ECF-subfamily sigma factor rbh
SCNpilot_cont_300_bf_scaffold_1461_curated_14
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13643..14074)
DNA (432bp) protein (144aa)
DGPFAETKE family protein {ECO:0000313|EMBL:KGB51720.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW95_9RHIZ
SCNpilot_cont_300_bf_scaffold_1461_curated_15
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14170..14547)
DNA (378bp) protein (126aa)
two-component receiver domain-containing protein
Two-component receiver domain protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H338_CAUCN
Response regulator {ECO:0000313|EMBL:AAK24977.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14544..15794)
DNA (1251bp) protein (417aa)
signal transduction histidine kinase rbh
Signal transduction histidine kinase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN23_CAUST rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:ADG11896.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_17
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15869..16990)
DNA (1122bp) protein (374aa)
magnesium and cobalt efflux protein CorB rbh
Magnesium and cobalt efflux protein corB n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H340_CAUCN rbh
CBS domain protein {ECO:0000313|EMBL:AAK24979.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17101..18219)
DNA (1119bp) protein (373aa)
3-dehydroquinate synthase n=1 Tax=Caulobacter sp. AP07 RepID=J2Q3Q3_9CAUL rbh
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
SCNpilot_cont_300_bf_scaffold_1461_curated_19
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18216..18761)
DNA (546bp) protein (182aa)
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG34_PHEZH
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_20
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18875..20263
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GWF4_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL34785.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_1461_curated_21
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21173..21463
DNA (291bp) protein (97aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
Uncharacterized protein n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IFW5_PHYMF
SCNpilot_cont_300_bf_scaffold_1461_curated_22
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21534..21881
DNA (348bp) protein (116aa)
Hypotheical conserved protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YUK7_9CAUL
Hypotheical conserved protein {ECO:0000313|EMBL:GAD59171.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_curated_23
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21893..22282)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CZ42_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ81691.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_curated_24
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22416..24389)
DNA (1974bp) protein (658aa)
RNA polymerase sigma factor RpoD n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003720ABA rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor rbh
SCNpilot_cont_300_bf_scaffold_1461_curated_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24735..25253)
DNA (519bp) protein (173aa)
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32404.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367D8DA
6-phosphogluconate dehydrogenase NAD-binding protein
SCNpilot_cont_300_bf_scaffold_1461_curated_26
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25597..27498)
DNA (1902bp) protein (634aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] rbh
DNA primase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H372_CAUCN rbh
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_27
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27678..28490
DNA (813bp) protein (271aa)
transport-associated protein
Transport-associated protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN95_CAUST
Transport-associated protein {ECO:0000313|EMBL:ADG11968.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_28
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28594..29163
DNA (570bp) protein (190aa)
transport-associated protein
Transport-associated protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN95_CAUST
Transport-associated protein {ECO:0000313|EMBL:ADG11968.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_29
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29164..29865)
DNA (702bp) protein (234aa)
hydrolase; K07025 putative hydrolase of the HAD superfamily rbh
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SX02_CAUSK rbh
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:ABZ70163.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1461_curated_30
Aggregatibacter actinomycetemcomitans, Aggregatibacter, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29970..30368
DNA (399bp) protein (133aa)
aminopeptidase C
Aminopeptidase C, putative n=11 Tax=Aggregatibacter actinomycetemcomitans RepID=C9R423_AGGAD
Aminopeptidase C, putative {ECO:0000313|EMBL:EGY37659.1}; TaxID=907489 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter.;" source="Aggregatibacter actinomycetemcomitans serotype e str. SCC393.;"
Displaying items 1-30 of 31 in total

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