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SCNpilot_cont_300_bf_scaffold_3810_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3810_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..334)
DNA (333bp) protein (111aa)
UPI0003D01796 related cluster n=1 Tax=unknown RepID=UPI0003D01796
Acylglycerol lipase {ECO:0000313|EMBL:ESZ19627.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
acylglycerol lipase (EC:3.1.1.23)
SCNpilot_cont_300_bf_scaffold_3810_curated_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(482..844)
DNA (363bp) protein (121aa)
Putative redox-sensing transcriptional regulator n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNZ5_9BRAD
Putative redox-sensing transcriptional regulator {ECO:0000313|EMBL:EGP07078.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
HxlR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3810_curated_3
Pseudomonas sp. GM79, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

947..1543
DNA (597bp) protein (199aa)
Putative flavoprotein n=1 Tax=Pseudomonas sp. GM79 RepID=J3I840_9PSED
Putative flavoprotein {ECO:0000313|EMBL:EJN17853.1}; TaxID=1144338 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM79.;"
nadph-dependent fmn reductase
SCNpilot_cont_300_bf_scaffold_3810_curated_4
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1540..1920)
DNA (381bp) protein (127aa)
YCII-like protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAG2_9RHIZ
YCII-like protein {ECO:0000313|EMBL:EHH11276.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
dgpfaetke family protein
SCNpilot_cont_300_bf_scaffold_3810_curated_5
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2075..2821
DNA (747bp) protein (249aa)
signal peptidase I n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00036AAAD6 rbh
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] rbh
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3810_curated_6
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2811..3185)
DNA (375bp) protein (125aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T517_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:ABZ72544.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3810_curated_7
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3584..4054
DNA (471bp) protein (157aa)
Uncharacterized protein (Fragment) n=1 Tax=Caulobacter sp. AP07 RepID=J3AL81_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL33491.1}; Flags: Precursor; Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3810_curated_8
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4075..4590)
DNA (516bp) protein (172aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Caulobacter crescentus OR37 RepID=R0EDW2_CAUCE
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
sugar fermentation stimulation protein; K06206 sugar fermentation stimulation protein A
SCNpilot_cont_300_bf_scaffold_3810_curated_9
unknown

Not on your lists

4878..5330
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3810_curated_10
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5377..5583)
DNA (207bp) protein (69aa)
sugar fermentation stimulation protein; K06206 sugar fermentation stimulation protein A
Sugar fermentation stimulation protein homolog n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VIF9_CAUST
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_3810_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6304..7068)
DNA (765bp) protein (255aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Caulobacter crescentus OR37 RepID=R0EDW2_CAUCE rbh
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
sugar fermentation stimulation protein A; K06206 sugar fermentation stimulation protein A rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_12
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7087..8076
DNA (990bp) protein (330aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Putative nuleotide-utilizing enzyme, moeA n=1 Tax=Caulobacter crescentus OR37 RepID=R0E1M3_CAUCE rbh
competence-damage protein rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_trna_1
unknown

Not on your lists

7916..8006
DNA (91bp)
transferRNA
SCNpilot_cont_300_bf_scaffold_3810_curated_13
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8183..8764
DNA (582bp) protein (194aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
TetR family transcriptional regulator
Transcriptional regulator, TetR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEI6_SPHWW
SCNpilot_cont_300_bf_scaffold_3810_curated_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9108..10865
DNA (1758bp) protein (586aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE54787.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Quinohemoprotein amine dehydrogenase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IW33_9SPHN rbh
quinohemoprotein amine dehydrogenase, 60 kDa subunit; K08685 quinohemoprotein amine dehydrogenase [EC:1.4.9.1] rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10862..12310
DNA (1449bp) protein (483aa)
Radical SAM protein {ECO:0000313|EMBL:KHK90439.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Radical SAM protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZK1_9SPHN rbh
radical SAM family protein; K06871 uncharacterized protein rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12307..12651
DNA (345bp) protein (115aa)
Quinohemoprotein amine dehydrogenase {ECO:0000313|EMBL:KHK90193.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E5F78A
SCNpilot_cont_300_bf_scaffold_3810_curated_17
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12706..13800
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K0F9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB29994.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_18
unknown

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comp(13701..13931)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3810_curated_19
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14189..14779
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IMD6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB29995.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3810_curated_20
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14776..16482
DNA (1707bp) protein (569aa)
Tax=GWF1_Sphingomonadales_63_6_curated
ABC transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IW40_9SPHN rbh
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16469..17227
DNA (759bp) protein (253aa)
Subtilisin-like serine proteases {ECO:0000313|EMBL:GAO54121.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZK7_9SPHN
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3810_curated_22
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17295..19883)
DNA (2589bp) protein (863aa)
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
TonB-dependent receptor rbh
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3V2_NOVAD rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20445..22274
DNA (1830bp) protein (610aa)
sulfotransferase rbh
Sulfotransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3V3_NOVAD rbh
Sulfotransferase {ECO:0000313|EMBL:ABD27470.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_3810_curated_24
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22211..23635)
DNA (1425bp) protein (475aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
Amino acid/peptide transporter n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCN3_PHEZH
SCNpilot_cont_300_bf_scaffold_3810_curated_25
unknown

Not on your lists

23949..24224
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3810_curated_26
Hyphomicrobium zavarzinii, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24364..25764
DNA (1401bp) protein (467aa)
Probable isopentenyl-diphosphate delta isomerase n=1 Tax=Hyphomicrobium zavarzinii RepID=Q7AYA7_9RHIZ rbh
Probable isopentenyl-diphosphate delta isomerase {ECO:0000313|EMBL:CAF31281.1}; EC=5.3.3.2 {ECO:0000313|EMBL:CAF31281.1};; TaxID=48292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium zavarzinii.;"
type I phosphodiesterase/nucleotide pyrophosphatase rbh
SCNpilot_cont_300_bf_scaffold_3810_curated_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26262..26954
DNA (693bp) protein (231aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPL3_NITHX rbh
3-dehydroquinate synthase {ECO:0000313|EMBL:ABE61834.1}; EC=4.2.3.4 {ECO:0000313|EMBL:ABE61834.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3810_curated_28
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26951..27310
DNA (360bp) protein (120aa)
Xylose isomerase-like enzyme n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WHR7_9BURK
Xylose isomerase-like enzyme {ECO:0000313|EMBL:EHR70329.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Sugar phosphate isomerase family enzyme
Displaying 29 items

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