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SCNpilot_cont_300_bf_scaffold_1104_curated

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1104_curated_1
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1108
DNA (1107bp) protein (369aa)
NAD-specific glutamate dehydrogenase n=1 Tax=Caulobacter sp. AP07 RepID=J2GSF6_9CAUL rbh
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:EJL25758.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2] rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_2
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1657..2253
DNA (597bp) protein (199aa)
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
NAD-glutamate dehydrogenase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T423_CAUSK
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:ABZ73907.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_3
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2241..2507
DNA (267bp) protein (89aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
NAD-specific glutamate dehydrogenase n=1 Tax=Caulobacter sp. AP07 RepID=J2GSF6_9CAUL
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
SCNpilot_cont_300_bf_scaffold_1104_curated_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2727..3059
DNA (333bp) protein (111aa)
sdhC; succinate dehydrogenase cytochrome b-556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase cytochrome b-556 subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RD20_PHEZH
Succinate dehydrogenase cytochrome b-556 subunit {ECO:0000313|EMBL:ACG76624.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_5
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3059..3445
DNA (387bp) protein (129aa)
succinate dehydrogenase,hydrophobic membrane anchor protein; K00242 succinate dehydrogenase membrane anchor subunit
Succinate dehydrogenase,hydrophobic membrane anchor protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RD21_PHEZH
Succinate dehydrogenase,hydrophobic membrane anchor protein {ECO:0000313|EMBL:ACG76625.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_6
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3445..5232
DNA (1788bp) protein (596aa)
Succinate dehydrogenase, flavoprotein subunit n=1 Tax=Caulobacter sp. AP07 RepID=J2GMX8_9CAUL rbh
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
succinate dehydrogenase flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_7
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5245..6033
DNA (789bp) protein (263aa)
sdhB; succinate dehydrogenase iron-sulfur subunit (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase iron-sulfur protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H645_CAUCN rbh
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6129..7334
DNA (1206bp) protein (402aa)
aldose 1-epimerase id=12554352 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
aldose 1-epimerase rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_9
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7357..7830)
DNA (474bp) protein (158aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UBS8_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AGC46351.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7882..8232
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF86503.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
ArsR family transcriptional regulator
ArsR family transcriptional regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UEQ1_MYXSD
SCNpilot_cont_300_bf_scaffold_1104_curated_11
unknown

Not on your lists

8229..8540
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1104_curated_12
unknown

Not on your lists

comp(8537..8872)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1104_curated_13
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8951..9916
DNA (966bp) protein (322aa)
DeoR family transcriptional regulator rbh
Transcriptional regulator, DeoR family n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFD6_CAUST rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ADG09668.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_14
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9967..11199
DNA (1233bp) protein (411aa)
ferredoxin reductase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003610941 rbh
NAD(P)H-nitrite reductase {ECO:0000313|EMBL:EJL24076.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3] rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_15
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11234..11554
DNA (321bp) protein (107aa)
ferredoxin; K04755 ferredoxin, 2Fe-2S
Ferredoxin n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QKC3_BRESC
Ferredoxin {ECO:0000313|EMBL:ADK99748.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_16
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

11726..13030
DNA (1305bp) protein (435aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024Z0_SOLUE
SCNpilot_cont_300_bf_scaffold_1104_curated_17
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13072..14841)
DNA (1770bp) protein (590aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
PAS/PAC sensor signal transduction histidine kinase rbh
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T470_CAUSK rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_18
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15463..15888
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0ER00_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ83452.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1104_curated_19
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15885..16340)
DNA (456bp) protein (152aa)
Transcriptional regulator, LysR family n=1 Tax=Caulobacter crescentus OR37 RepID=R0EP30_CAUCE
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ENZ82797.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
SCNpilot_cont_300_bf_scaffold_1104_curated_20
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16337..16747)
DNA (411bp) protein (137aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2H5I4_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:EJL38100.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
SCNpilot_cont_300_bf_scaffold_1104_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16881..17438
DNA (558bp) protein (186aa)
Alkylhydroperoxide reductase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT3_BREDI rbh
Alkylhydroperoxide reductase {ECO:0000313|EMBL:EGF96020.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17536..18069
DNA (534bp) protein (178aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
alkylhydroperoxidase AhpD family (EC:1.11.1.15); K04756 alkyl hydroperoxide reductase subunit D
Alkyl hydroperoxide reductase AhpD n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QLC3_BRESC
SCNpilot_cont_300_bf_scaffold_1104_curated_23
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18077..18607)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H5I0_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL38095.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1104_curated_24
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..19860
DNA (1152bp) protein (384aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Caulobacter sp. AP07 RepID=J3ANP4_9CAUL rbh
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL34776.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
aspartate transaminase (EC:2.6.1.1) rbh
SCNpilot_cont_300_bf_scaffold_1104_curated_25
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19857..20708)
DNA (852bp) protein (284aa)
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] rbh
Glutamate racemase n=1 Tax=Caulobacter sp. (strain K31) RepID=MURI_CAUSK rbh
Glutamate racemase {ECO:0000255|HAMAP-Rule:MF_00258}; EC=5.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00258};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_26
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20817..21830
DNA (1014bp) protein (338aa)
GumN family protein
GumN family protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VQ44_CAUST
GumN family protein {ECO:0000313|EMBL:ADG12617.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_27
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21827..22753)
DNA (927bp) protein (309aa)
glycosyl transferase family 14
Glycosyl transferase family 14 n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJE3_METS6
Putative Glycosyl transferase, family 14 {ECO:0000313|EMBL:CAZ90350.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_28
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23049..24569
DNA (1521bp) protein (507aa)
srp; signal recognition particle GTPase, SRP; K03106 signal recognition particle subunit SRP54 rbh
Signal recognition particle protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GVT0_CAUCN rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_29
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24616..25152
DNA (537bp) protein (179aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
30S ribosomal protein S16 n=1 Tax=Caulobacter sp. (strain K31) RepID=RS16_CAUSK
30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1104_curated_30
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25188..25700
DNA (513bp) protein (171aa)
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM n=2 Tax=Proteobacteria RepID=D5VPX9_CAUST
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
Displaying items 1-30 of 51 in total

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