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SCNpilot_cont_300_bf_scaffold_1829_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1829_curated_1
unknown

Not on your lists

comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1829_curated_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

456..2003
DNA (1548bp) protein (516aa)
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit n=1 Tax=Caulobacter sp. AP07 RepID=J2GUN5_9CAUL rbh
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit {ECO:0000313|EMBL:EJL34140.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
indolepyruvate ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_3
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1973..2635
DNA (663bp) protein (221aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
polyketide cyclase/dehydrase and lipid transport
Polyketide cyclase / dehydrase and lipid transport n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZDB9_TERRK
SCNpilot_cont_300_bf_scaffold_1829_curated_4
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2723..3970)
DNA (1248bp) protein (416aa)
glucose/sorbosone dehydrogenase id=12554856 bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:ENZ83370.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
glucose/sorbosone dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4002..5246)
DNA (1245bp) protein (415aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EKK6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ58162.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
group 1 glycosyl transferase
SCNpilot_cont_300_bf_scaffold_1829_curated_trna_3
unknown

Not on your lists

comp(5302..5375)
DNA (74bp)
transferRNA
SCNpilot_cont_300_bf_scaffold_1829_curated_6
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5390..6487)
DNA (1098bp) protein (366aa)
CheY-like receiver domain-containing protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H6H4_9CAUL rbh
CheY-like receiver domain-containing protein {ECO:0000313|EMBL:EJL31008.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
histidine kinase rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_7
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6625..7362
DNA (738bp) protein (246aa)
exoenzyme S synthesis protein B; K06920 queuosine biosynthesis protein QueC rbh
7-cyano-7-deazaguanine synthase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=QUEC_CAUCN rbh
7-cyano-7-deazaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000255|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000255|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000255|HAMAP-Rule:MF_01633}; TaxID=565050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain NA1000 / CB15N).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7362..7994
DNA (633bp) protein (211aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Caulobacter sp. AP07 RepID=J2GLF2_9CAUL rbh
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
queuosine biosynthesis protein QueE rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8036..8407
DNA (372bp) protein (124aa)
6-pyruvoyl tetrahydrobiopterin synthase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00035C7790
bifunctional 6-pyruvoyl tetrahydropterin synthase/hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_1829_curated_10
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8417..8653)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBB8_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EDX81111.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1829_curated_11
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9348..10046)
DNA (699bp) protein (233aa)
hypothetical protein; K06911 rbh
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RH81_PHEZH rbh
Uncharacterized protein {ECO:0000313|EMBL:ACG79029.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_12
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10120..11019)
DNA (900bp) protein (300aa)
SSS family solute/sodium (Na+) symporter; K14393 cation/acetate symporter rbh
SSS sodium solute transporter superfamily n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SW91_CAUSK rbh
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:ABZ70088.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_13
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10998..11759)
DNA (762bp) protein (254aa)
SSS family solute/sodium (Na+) symporter; K14393 cation/acetate symporter
SSS sodium solute transporter superfamily n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SW91_CAUSK
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:ABZ70088.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_14
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11756..12070)
DNA (315bp) protein (105aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Xanthomonas campestris RepID=G0CIK2_XANCA
Uncharacterized protein {ECO:0000313|EMBL:AAM43279.1}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_15
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12161..13258)
DNA (1098bp) protein (366aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=AROC_CAUCN rbh
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_16
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13411..14163)
DNA (753bp) protein (251aa)
chaperone protein DnaJ; K05516 curved DNA-binding protein
Chaperone protein DnaJ n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H291_CAUCN
DnaJ family protein {ECO:0000313|EMBL:AAK22901.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_17
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14192..14857
DNA (666bp) protein (222aa)
pdxH; pyridoxamine 5'-phosphate oxidase; K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] rbh
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHV6_PHEZH rbh
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_18
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14991..15638)
DNA (648bp) protein (216aa)
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
uridine kinase n=1 Tax=alpha proteobacterium L41A RepID=UPI0003755FF2
uridine kinase; K00876 uridine kinase [EC:2.7.1.48]
SCNpilot_cont_300_bf_scaffold_1829_curated_19
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15743..18418
DNA (2676bp) protein (892aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II (Fragment) n=1 Tax=Caulobacter sp. AP07 RepID=J2P483_9CAUL rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJL21807.1}; Flags: Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_20
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18415..19305)
DNA (891bp) protein (297aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6) rbh
Hydroxyacylglutathione hydrolase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H297_CAUCN rbh
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:AAK22907.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_21
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19363..19509
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GGT7_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL29225.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1829_curated_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19506..19916)
DNA (411bp) protein (137aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
TIGR01244 family protein n=1 Tax=Caulobacter sp. AP07 RepID=J3ACM3_9CAUL
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1829_curated_23
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20024..20947
DNA (924bp) protein (308aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
ABC transporter n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039EE44D rbh
oppB; oligopeptide transport system permease OppB; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_24
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

20959..21849
DNA (891bp) protein (297aa)
peptide ABC transporter permease n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B50978 rbh
Peptide ABC transporter permease {ECO:0000313|EMBL:KIF12735.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
binding-protein-dependent transport system inner membrane protein; K15582 oligopeptide transport system permease protein rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_25
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23231..23437
DNA (207bp) protein (69aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
peptide ABC transporter substrate-binding protein n=1 Tax=Ponticaulis koreensis RepID=UPI0003B2FAD0
extracellular solute-binding protein; K15580 oligopeptide transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1829_curated_26
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23757..24803
DNA (1047bp) protein (349aa)
TonB-dependent receptor plug
TonB-dependent receptor plug n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMS4_CAUST
TonB-dependent receptor plug {ECO:0000313|EMBL:ADG11797.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_1829_curated_27
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26050..26892
DNA (843bp) protein (281aa)
Uncharacterized protein {ECO:0000313|EMBL:KJV40072.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
Oar protein
Oar protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQ14_PSEUP
SCNpilot_cont_300_bf_scaffold_1829_curated_28
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27250..28203)
DNA (954bp) protein (318aa)
Signal peptide peptidase SppA, 67K type n=1 Tax=Caulobacter crescentus OR37 RepID=R0E7N5_CAUCE rbh
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
signal peptide peptidase SppA; K04773 protease IV [EC:3.4.21.-] rbh
SCNpilot_cont_300_bf_scaffold_1829_curated_trna_2
unknown

Not on your lists

comp(29114..29187)
DNA (74bp)
transferRNA
Displaying items 1-30 of 34 in total

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