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SCNpilot_cont_300_bf_scaffold_1777_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1777_curated_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..725
DNA (723bp) protein (241aa)
oxidoreductase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488631 rbh
oxidoreductase domain-containing protein rbh
Oxidoreductase domain protein {ECO:0000313|EMBL:ABQ68244.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_1777_curated_2
unknown

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757..1188
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1777_curated_3
RLO_PLX_64_10, Bacteria

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comp(1257..2117)
DNA (861bp) protein (287aa)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Uncharacterized protein n=1 Tax=Bacillus nealsonii AAU1 RepID=R9C6U2_9BACI
SCNpilot_cont_300_bf_scaffold_1777_curated_4
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3027..4328)
DNA (1302bp) protein (434aa)
Hexuronate transporter ExuT n=1 Tax=Burkholderia terrae BS001 RepID=I5D3K0_9BURK rbh
Hexuronate transporter ExuT {ECO:0000313|EMBL:EIN02719.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
major facilitator superfamily protein; K08191 MFS transporter, ACS family, hexuronate transporter rbh
SCNpilot_cont_300_bf_scaffold_1777_curated_5
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4392..5105)
DNA (714bp) protein (238aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Caulobacter sp. AP07 RepID=J2GJ67_9CAUL rbh
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJL30135.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
bifunctional D-altronate/D-mannonate dehydratase rbh
SCNpilot_cont_300_bf_scaffold_1777_curated_6
Chondrus crispus, Chondrus, Gigartinales, Florideophyceae, Eukaryota

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5810..6889
DNA (1080bp) protein (360aa)
Mannitol dehydrogenase rossman domain family n=1 Tax=Chondrus crispus RepID=R7QP50_CHOCR
Mannitol dehydrogenase rossman domain family {ECO:0000313|EMBL:CDF39165.1}; TaxID=2769 species="Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Chondrus.;" source="Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa).;"
SCNpilot_cont_300_bf_scaffold_1777_curated_7
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6877..8292)
DNA (1416bp) protein (472aa)
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12] rbh
Uronate isomerase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDM6_9SPHN rbh
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_1777_curated_8
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8435..9193
DNA (759bp) protein (253aa)
GntR family transcriptional regulator rbh
Transcriptional regulator, GntR family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H2U8_CAUCN rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AAK22970.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_1777_curated_9
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9243..10769
DNA (1527bp) protein (509aa)
Polysaccharide biosynthesis protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VYZ0_9SPHN
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EZP81719.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
polysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_1777_curated_10
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10776..13442)
DNA (2667bp) protein (889aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC58082.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F6593A rbh
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_1777_curated_11
unknown

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comp(13849..14688)
DNA (840bp) protein (280aa)

This feature has no annotations

Displaying 11 items

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