ggKbase home page

SCNpilot_cont_300_bf_scaffold_3491_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3491_curated_1
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..181)
DNA (180bp) protein (60aa)
protein imuB, partial n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00035FF42C
hypothetical protein; K14161 protein ImuB
Uncharacterized protein {ECO:0000313|EMBL:ABZ73582.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3491_curated_2
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1336..3294)
DNA (1959bp) protein (653aa)
polysaccharide biosynthesis protein CapD n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000361060F rbh
polysaccharide biosynthesis protein CapD; K13013 O-antigen biosynthesis protein WbqV rbh
Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:ABZ73579.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3491_curated_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3402..4238)
DNA (837bp) protein (279aa)
ferredoxin--NADP reductase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003791539 rbh
Flavodoxin reductase family protein {ECO:0000313|EMBL:EJL38409.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
oxidoreductase FAD/NAD(P)-binding subunit; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4532..4921
DNA (390bp) protein (130aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T074_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:ABZ73564.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3491_curated_5
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4932..5114)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CWA9_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ80781.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3491_curated_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5202..6275)
DNA (1074bp) protein (358aa)
3-isopropylmalate dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D90F47 rbh
Tartrate dehydrogenase {ECO:0000313|EMBL:KDP73110.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
tartrate dehydrogenase; K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_7
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6299..7561)
DNA (1263bp) protein (421aa)
Membrane protein {ECO:0000313|EMBL:KJC46007.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
MFS permease; K13021 MFS transporter, ACS family, tartrate transporter rbh
MFS permease n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89FX9_BRADU rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7763..9016
DNA (1254bp) protein (418aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWL2_9GAMM rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL91603.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
major facilitator superfamily protein rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_trna_1
unknown

Not on your lists

9160..9238
DNA (79bp)
transferRNA
SCNpilot_cont_300_bf_scaffold_3491_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9334..9660
DNA (327bp) protein (109aa)
protein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H421_CAUCN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_3491_curated_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9670..10233
DNA (564bp) protein (188aa)
Transcription termination/antitermination protein NusG n=1 Tax=Caulobacter sp. AP07 RepID=J2QE37_9CAUL rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10581..10841
DNA (261bp) protein (87aa)
PREDICTED: 50S ribosomal protein L11, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C19DB0
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_cont_300_bf_scaffold_3491_curated_12
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10845..11537
DNA (693bp) protein (231aa)
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
50S ribosomal protein L1 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHY6_CAUST rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_3491_curated_13
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11595..12815)
DNA (1221bp) protein (407aa)
Cytoplasmic protein {ECO:0000313|EMBL:KKC25540.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PNQ8_9RHIZ rbh
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_14
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12971..14167
DNA (1197bp) protein (399aa)
S-adenosylmethionine synthetase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037FDE94 rbh
metK; S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] rbh
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_3491_curated_15
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14205..15068
DNA (864bp) protein (288aa)
M24/M37 family peptidase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Peptidase, M23/M37 family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RD55_PHEZH
SCNpilot_cont_300_bf_scaffold_3491_curated_16
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15146..16531
DNA (1386bp) protein (462aa)
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] rbh
Carboxyl-terminal protease n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T322_CAUSK rbh
Carboxyl-terminal protease {ECO:0000313|EMBL:ABZ73844.1}; EC=3.4.21.102 {ECO:0000313|EMBL:ABZ73844.1};; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_3491_curated_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16537..18015)
DNA (1479bp) protein (493aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ33_9SPHN rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18146..19321
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GL41_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL30885.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein; K09798 hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_3491_curated_19
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19379..19858
DNA (480bp) protein (160aa)
PREDICTED: nudix hydrolase 26, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1054F
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
MutT/nudix family protein; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Displaying 20 items

View Taxonomy