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SCNpilot_cont_300_bf_scaffold_2038_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2038_curated_1
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..640)
DNA (639bp) protein (213aa)
Porin {ECO:0000313|EMBL:KJS25303.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI0003720C2E
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_2038_curated_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

836..1165
DNA (330bp) protein (110aa)
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9T8_PHEZH
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACG77852.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1165..1824
DNA (660bp) protein (220aa)
Permease, glycerol uptake facilitator n=1 Tax=Caulobacter sp. AP07 RepID=J2PFM5_9CAUL rbh
Permease, glycerol uptake facilitator {ECO:0000313|EMBL:EJL26027.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
aquaporin/glycerol uptake facilitator protein rbh
SCNpilot_cont_300_bf_scaffold_2038_curated_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1821..2240
DNA (420bp) protein (140aa)
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HZ79_AZOC5
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2245..5652)
DNA (3408bp) protein (1136aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3D650 rbh
polysaccharide deacetylase rbh
Polysaccharide deacetylase {ECO:0000313|EMBL:AGH47940.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_2038_curated_6
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5898..6500)
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IYP4_9SPHN
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
wrbA; TrpR binding protein WrbA; K03809 Trp repressor binding protein
SCNpilot_cont_300_bf_scaffold_2038_curated_7
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6584..6889
DNA (306bp) protein (102aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VIM1_CAUST
Uncharacterized protein {ECO:0000313|EMBL:ADG09837.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6898..7500
DNA (603bp) protein (201aa)
Uracil-DNA glycosylase n=1 Tax=Caulobacter sp. AP07 RepID=J2H4X8_9CAUL rbh
Uracil-DNA glycosylase {ECO:0000313|EMBL:EJL37900.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
uracil-DNA glycosylase superfamily protein rbh
SCNpilot_cont_300_bf_scaffold_2038_curated_9
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7497..8510
DNA (1014bp) protein (338aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4S9_CAUSK rbh
Uncharacterized protein {ECO:0000313|EMBL:ABZ72456.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_10
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8526..9812)
DNA (1287bp) protein (429aa)
di- and tricarboxylate transporter-like protein
Di-and tricarboxylate transporter-like protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGB5_PHEZH
Di-and tricarboxylate transporter-like protein {ECO:0000313|EMBL:ACG77239.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_11
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9904..10710
DNA (807bp) protein (269aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WAN8_9CAUL
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2038_curated_12
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10854..11531
DNA (678bp) protein (226aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
UPI0003D06C4B related cluster n=1 Tax=unknown RepID=UPI0003D06C4B rbh
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
SCNpilot_cont_300_bf_scaffold_2038_curated_13
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11567..12466)
DNA (900bp) protein (300aa)
Putative transcriptional regulatory protein,LysR family OprD regulatory protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EPL6_9RHIZ rbh
Putative transcriptional regulatory protein,LysR family OprD regulatory protein {ECO:0000313|EMBL:CCV06090.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transcriptional regulator rbh
SCNpilot_cont_300_bf_scaffold_2038_curated_14
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12676..13092
DNA (417bp) protein (139aa)
Scaffold46, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29882.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GG08_9SPHN
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
SCNpilot_cont_300_bf_scaffold_2038_curated_15
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13089..13871
DNA (783bp) protein (261aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] rbh
Carboxymuconolactone decarboxylase n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QBS8_GLUHA
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EFG85506.1}; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii ATCC 23769.;"
SCNpilot_cont_300_bf_scaffold_2038_curated_16
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13868..14293
DNA (426bp) protein (142aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6598B
Uncharacterized protein {ECO:0000313|EMBL:EKU74544.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
antibiotic biosynthesis monooxygenase
SCNpilot_cont_300_bf_scaffold_2038_curated_17
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14333..15454)
DNA (1122bp) protein (374aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9B7_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:ACG79377.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15550..15858
DNA (309bp) protein (103aa)
transcriptional regulator
ArsR family transcriptional regulator n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000362A892
Putative transcriptional regulator {ECO:0000313|EMBL:AGA29428.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_cont_300_bf_scaffold_2038_curated_19
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15843..16214
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WUT9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK86793.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2038_curated_20
unknown

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comp(16217..16390)
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 20 items

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