ggKbase home page

SCNpilot_cont_300_bf_scaffold_2724_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2724_curated_1
unknown

Not on your lists

comp(3..725)
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2724_curated_2
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(730..1086)
DNA (357bp) protein (119aa)
glutathione-dependent formaldehyde-activating protein GFA
Glutathione-dependent formaldehyde-activating GFA n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJZ6_CAUST
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:ADG10675.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1121..3355)
DNA (2235bp) protein (745aa)
DNA polymerase III, alpha subunit n=1 Tax=Caulobacter sp. AP07 RepID=J2P3B5_9CAUL rbh
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] rbh
SCNpilot_cont_300_bf_scaffold_2724_curated_4
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3653..4867
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AYP5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAD59813.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
SCNpilot_cont_300_bf_scaffold_2724_curated_5
unknown

Not on your lists

5093..5326
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2724_curated_6
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5758..6024)
DNA (267bp) protein (89aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B322E9
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
SCNpilot_cont_300_bf_scaffold_2724_curated_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6594..7289)
DNA (696bp) protein (232aa)
ABC transporter-like protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter related n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZ26_CAUSK rbh
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_8
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7282..7449)
DNA (168bp) protein (56aa)
lipoprotein release ABC transporter permease; K09808 lipoprotein-releasing system permease protein
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBZ8_PHEZH
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:ACG78195.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_9
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7436..8497)
DNA (1062bp) protein (354aa)
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein rbh
Lipoprotein releasing system, transmembrane protein, LolC/E family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZ27_CAUSK rbh
Lipoprotein releasing system, transmembrane protein, LolC/E family {ECO:0000313|EMBL:ABZ71938.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8494..9819)
DNA (1326bp) protein (442aa)
Proline--tRNA ligase n=1 Tax=Caulobacter sp. AP07 RepID=J2P3C1_9CAUL rbh
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01570}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] rbh
SCNpilot_cont_300_bf_scaffold_2724_curated_11
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10123..10383)
DNA (261bp) protein (87aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VGW3_CAUST
Uncharacterized protein {ECO:0000313|EMBL:ADG10681.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_12
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10380..10802)
DNA (423bp) protein (141aa)
PREDICTED: methylmalonyl-CoA epimerase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10782
methylmalonyl CoA epimerase (EC:5.1.99.1); K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
Lactoylglutathione lyase, putative {ECO:0000313|EMBL:AAK23908.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_13
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10985..12271)
DNA (1287bp) protein (429aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
metallo-beta-lactamase; K07021 rbh
Metallo-beta-lactamase family protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC02_PHEZH rbh
SCNpilot_cont_300_bf_scaffold_2724_curated_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12685..13053)
DNA (369bp) protein (123aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--acetyl-CoA-carboxylase ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZ34_CAUSK
Biotin--acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:ABZ71945.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2724_curated_15
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13032..13391)
DNA (360bp) protein (120aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--acetyl-CoA-carboxylase ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZ34_CAUSK
BirA, biotin-(Acetyl-CoA-carboxylase) ligase {ECO:0000313|EMBL:EJL21478.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_2724_curated_16
unknown

Not on your lists

comp(13381..13539)
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying 16 items

View Taxonomy