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SCNpilot_cont_300_bf_scaffold_5463_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5463_curated_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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495..2036
DNA (1542bp) protein (514aa)
parC; DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A [EC:5.99.1.-] rbh
DNA topoisomerase 4 subunit A n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCT9_PHEZH rbh
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_2
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2101..3435
DNA (1335bp) protein (445aa)
beta-lactamase rbh
Beta-lactamase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKR5_CAUST rbh
Beta-lactamase {ECO:0000313|EMBL:ADG11088.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3462..4031
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEG1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29022.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
LemA family protein; K03744 LemA protein
SCNpilot_cont_300_bf_scaffold_5463_curated_4
unknown

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comp(4411..4698)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5463_curated_5
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5137..5994)
DNA (858bp) protein (286aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8] rbh
Putative arginyl-tRNA--protein transferase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1K0_CAUSK rbh
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_6
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5997..6887)
DNA (891bp) protein (297aa)
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB rbh
OmpA/MotB domain protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1J9_CAUSK rbh
OmpA/MotB domain protein {ECO:0000313|EMBL:ABZ72188.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6978..7829
DNA (852bp) protein (284aa)
3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] rbh
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB46_PHEZH rbh
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:ACG78097.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_8
unknown

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7973..8170
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5463_curated_9
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8184..9188)
DNA (1005bp) protein (335aa)
porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJ44_CAUST rbh
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_10
unknown

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comp(9185..9541)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5463_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9735..10874
DNA (1140bp) protein (380aa)
Acyl-CoA dehydrogenase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EGA9_CAUCE rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENZ80302.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-] rbh
SCNpilot_cont_300_bf_scaffold_5463_curated_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11162..11809
DNA (648bp) protein (216aa)
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB39_PHEZH
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:ACG78090.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_13
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11860..12621
DNA (762bp) protein (254aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1I9_CAUSK rbh
Uncharacterized protein {ECO:0000313|EMBL:ABZ72178.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_14
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12635..13531
DNA (897bp) protein (299aa)
3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] rbh
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB38_PHEZH rbh
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_15
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13703..14932
DNA (1230bp) protein (410aa)
PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1413C rbh
5-aminolevulinate synthase (EC:2.3.1.37); K00643 5-aminolevulinate synthase [EC:2.3.1.37] rbh
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_16
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15106..15567)
DNA (462bp) protein (154aa)
transcriptional regulator
Transcriptional regulator n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H531_CAUCN
Transcriptional regulator {ECO:0000313|EMBL:AAK23337.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_17
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15722..16999
DNA (1278bp) protein (426aa)
Serine hydroxymethyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J3ALX8_9CAUL rbh
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] rbh
SCNpilot_cont_300_bf_scaffold_5463_curated_18
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17030..17506
DNA (477bp) protein (159aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR n=1 Tax=Caulobacter sp. AP07 RepID=J2GTS1_9CAUL
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_19
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17509..17976
DNA (468bp) protein (156aa)
PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17931
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
SCNpilot_cont_300_bf_scaffold_5463_curated_20
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17973..18437
DNA (465bp) protein (155aa)
N utilization substance protein B homolog n=1 Tax=Caulobacter sp. AP07 RepID=J2HE15_9CAUL
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
Nusb antitermination factor; K03625 N utilization substance protein B
SCNpilot_cont_300_bf_scaffold_5463_curated_21
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18424..19398
DNA (975bp) protein (325aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] rbh
Thiamine-monophosphate kinase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1I1_CAUSK rbh
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_5463_curated_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19425..19793
DNA (369bp) protein (123aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB25_PHEZH
Displaying 22 items

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