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SCNpilot_expt_1000_bf_scaffold_16771_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_16771_curated_1
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..219
DNA (219bp) protein (73aa)
30S ribosomal protein S18 n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HIJ5_9PROT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
ribosomal protein s18; K02963 small subunit ribosomal protein S18
SCNpilot_expt_1000_bf_scaffold_16771_curated_2
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

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230..814
DNA (585bp) protein (195aa)
50S ribosomal protein L9 n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9E1S8_9PROT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_1000_bf_scaffold_16771_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(897..2195)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFA0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41292.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K03699 putative hemolysin rbh
SCNpilot_expt_1000_bf_scaffold_16771_curated_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2274..2699)
DNA (426bp) protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM31669.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Burkholderia cepacia GG4 RepID=J7J9Q8_BURCE
SCNpilot_expt_1000_bf_scaffold_16771_curated_5
Ralstonia syzygii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2713..3186)
DNA (474bp) protein (158aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Ralstonia syzygii R24 RepID=G3A6S3_9RALS
Uncharacterized protein {ECO:0000313|EMBL:CCA86174.1}; TaxID=907261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia syzygii R24.;"
SCNpilot_expt_1000_bf_scaffold_16771_curated_6
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3210..3554)
DNA (345bp) protein (115aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
ArsR family transcriptional regulator n=1 Tax=Methylocystis rosea RepID=UPI000375BE9C
Toxin-antitoxin system, antitoxin component, ArsR family
SCNpilot_expt_1000_bf_scaffold_16771_curated_7
unknown

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comp(3786..3962)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16771_curated_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4358..4522
DNA (165bp) protein (55aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J9DEE8_9RHOB
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
SCNpilot_expt_1000_bf_scaffold_16771_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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4629..5357
DNA (729bp) protein (243aa)
Mlr7403 protein {ECO:0000313|EMBL:CDO60854.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RBS8_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_16771_curated_10
unknown

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comp(5248..6111)
DNA (864bp) protein (288aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16771_curated_11
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6400..6708
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:CCQ74078.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Putative pyrrolo-quinoline quinone n=1 Tax=Oceanibaculum indicum P24 RepID=K2KLC6_9PROT
Pyrrolo-quinoline quinone
SCNpilot_expt_1000_bf_scaffold_16771_curated_12
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6794..7051
DNA (258bp) protein (86aa)
GTP-binding protein EngA; K03977 GTP-binding protein
GTPase Der n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TBS7_PARBH
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC; 12087).;"
SCNpilot_expt_1000_bf_scaffold_16771_curated_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7048..8202
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036719B0 rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
engA; GTP-binding protein EngA; K03977 GTP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_16771_curated_14
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8396..8797)
DNA (402bp) protein (134aa)
oxidoreductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003156A39
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABY32302.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
SCNpilot_expt_1000_bf_scaffold_16771_curated_15
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9083..10342)
DNA (1260bp) protein (420aa)
Amidophosphoribosyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1S5_9PROT rbh
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
amidophosphoribosyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_16771_curated_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11263..11619)
DNA (357bp) protein (119aa)
DNA repair protein radA id=3645214 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
Displaying 16 items

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