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SCNpilot_expt_1000_bf_scaffold_11858_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11858_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..277
DNA (276bp) protein (92aa)
SsrA-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9Y6_9BRAD
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
smpB; SsrA-binding protein; K03664 SsrA-binding protein
SCNpilot_expt_1000_bf_scaffold_11858_curated_2
RBG_13_RIF_OD1_08_40_8_curated, RIF-OD1-8, Parcubacteria, Bacteria

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321..617
DNA (297bp) protein (99aa)
Tax=RBG_13_RIF_OD1_08_40_8_curated
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D9W7_SPHYA
excinuclease ABC subunit C domain-containing protein
SCNpilot_expt_1000_bf_scaffold_11858_curated_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(646..1284)
DNA (639bp) protein (213aa)
uracil-DNA glycosylase family protein
Uracil-DNA glycosylase superfamily n=3 Tax=Oligotropha carboxidovorans RepID=B6JGA8_OLICO
Uracil-DNA glycosylase family protein {ECO:0000313|EMBL:AEI06885.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_11858_curated_4
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1353..1901)
DNA (549bp) protein (183aa)
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
hypothetical protein
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037E539B
SCNpilot_expt_1000_bf_scaffold_11858_curated_5
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1950..2432
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:KJV08371.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HM67_9PROT
7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
SCNpilot_expt_1000_bf_scaffold_11858_curated_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2544..2927
DNA (384bp) protein (128aa)
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhodovulum sp. PH10 RepID=J5PKE9_9RHOB
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
SCNpilot_expt_1000_bf_scaffold_11858_curated_7
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3347..3535)
DNA (189bp) protein (63aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_11858_curated_8
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3901..5259
DNA (1359bp) protein (453aa)
Guanosine polyphosphate pyrophosphohydrolase/synthetase rbh
Guanosine polyphosphate pyrophosphohydrolase/synthetase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKZ2_TISMK rbh
Guanosine polyphosphate pyrophosphohydrolase/synthetase {ECO:0000313|EMBL:AFK53430.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_11858_curated_9
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5315..5899
DNA (585bp) protein (195aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
Orotate phosphoribosyltransferase n=1 Tax=Maricaulis maris (strain MCS10) RepID=PYRE_MARMM
Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01208};; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_11858_curated_10
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6006..6827
DNA (822bp) protein (274aa)
Pyridoxine 5'-phosphate synthase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L6C5_9PROT rbh
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] rbh
SCNpilot_expt_1000_bf_scaffold_11858_curated_11
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7263..7436
DNA (174bp) protein (58aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7); K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
4''''-phosphopantetheinyl transferase n=1 Tax=Afipia birgiae RepID=UPI00031F0454
SCNpilot_expt_1000_bf_scaffold_11858_curated_12
unknown

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7535..7597
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 12 items

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