ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3666_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3666_curated_1
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..273)
DNA (273bp) protein (91aa)
Tax=BJP_IG2158_Rhodobacterales_64_37
UPI0003D1AE80 related cluster n=1 Tax=unknown RepID=UPI0003D1AE80
SNARE associated Golgi protein
SCNpilot_expt_1000_bf_scaffold_3666_curated_2
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(275..661)
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB09628.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YIZ2_MOBAS
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3666_curated_3
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(678..806)
DNA (129bp) protein (43aa)
Tax=BJP_IG2158_Rhodobacterales_64_37
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NY40_9RHOB
SCNpilot_expt_1000_bf_scaffold_3666_curated_4
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(935..2326)
DNA (1392bp) protein (464aa)
Copper oxidase {ECO:0000313|EMBL:KJS45055.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
copper oxidase n=2 Tax=Rhodobacteraceae RepID=UPI00037D4D24 rbh
multicopper oxidase type 2 rbh
SCNpilot_expt_1000_bf_scaffold_3666_curated_5
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2493..2843)
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX29725.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037B9C9E
SCNpilot_expt_1000_bf_scaffold_3666_curated_6
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3123..3824
DNA (702bp) protein (234aa)
Integral membrane protein n=1 Tax=Citreicella sp. 357 RepID=I1AV06_9RHOB rbh
Integral membrane protein {ECO:0000313|EMBL:EIE50327.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3666_curated_7
Cedecea neteri, Cedecea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4004..4297)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:AIR69907.1}; TaxID=158822 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cedecea.;" source="Cedecea neteri.;"
UPI0003A89567 related cluster n=2 Tax=Dickeya zeae RepID=UPI0003A89567
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3666_curated_8
RLO_PLX_64_10, Bacteria

Not on your lists

comp(4861..6204)
DNA (1344bp) protein (448aa)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Nitrogen regulation protein ntrY n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1X6_9PROT rbh
response regulator receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3666_curated_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6194..7540)
DNA (1347bp) protein (449aa)
response regulator rbh
Response regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1Z1_9SPHN rbh
Response regulator {ECO:0000313|EMBL:AGH49801.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_3666_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7679..8989
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037C35F1 rbh
RND transporter {ECO:0000313|EMBL:AJP72159.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HlyD family secretion protein
SCNpilot_expt_1000_bf_scaffold_3666_curated_11
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8979..9686
DNA (708bp) protein (236aa)
ABC transporter, ATP-binding protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3U7_9PROT rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGX99811.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3666_curated_12
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9697..12168
DNA (2472bp) protein (824aa)
ABC transporter, permease protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3U8_9PROT rbh
ABC transporter, permease protein {ECO:0000313|EMBL:EGX99812.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
putative ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_3666_curated_13
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12161..13573
DNA (1413bp) protein (471aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
outer membrane efflux protein rbh
Outer membrane efflux protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPM9_HERSS rbh
SCNpilot_expt_1000_bf_scaffold_3666_curated_14
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13584..14018)
DNA (435bp) protein (145aa)
Alkaline phosphatase family protein {ECO:0000313|EMBL:EZP70165.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
UPI0003D000D6 related cluster n=1 Tax=unknown RepID=UPI0003D000D6
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
SCNpilot_expt_1000_bf_scaffold_3666_curated_15
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13970..14608)
DNA (639bp) protein (213aa)
Tax=GWF1_Sphingomonadales_63_6_curated
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NHV0_9CAUL
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
SCNpilot_expt_1000_bf_scaffold_3666_curated_16
unknown

Not on your lists

15445..15606
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_17
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15667..16644
DNA (978bp) protein (326aa)
apbE; thiamine biosynthesis lipoprotein; apbe family; K03734 thiamine biosynthesis lipoprotein rbh
Thiamine biosynthesis lipoprotein apbE family n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RD18_CUPTR rbh
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:KJK25298.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_3666_curated_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(16660..17895)
DNA (1236bp) protein (412aa)
quinoprotein glucose dehydrogenase (EC:1.1.5.2); K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Quinoprotein glucose dehydrogenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028C8_SOLUE
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:ABJ82629.1}; EC=1.1.5.2 {ECO:0000313|EMBL:ABJ82629.1};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_3666_curated_19
unknown

Not on your lists

17967..18185
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_20
unknown

Not on your lists

18710..18910
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_21
unknown

Not on your lists

19220..19477
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_22
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20197..20541)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4R3T7_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ86113.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3666_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20878..21507)
DNA (630bp) protein (210aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLN9_NITHX
Uncharacterized protein {ECO:0000313|EMBL:ABE62858.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_3666_curated_24
RHI_Planctomycetes_42_15, Planctomycetes, Bacteria

Not on your lists

comp(21507..22076)
DNA (570bp) protein (190aa)
Tax=RIFCSPHIGHO2_12_Planctomycetes_42_15_curated
hypothetical protein
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RQD7_RHORT
SCNpilot_expt_1000_bf_scaffold_3666_curated_25
unknown

Not on your lists

comp(22149..22373)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_26
unknown

Not on your lists

comp(22348..23352)
DNA (1005bp) protein (335aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_27
unknown

Not on your lists

comp(23328..23432)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3666_curated_28
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23670..23918
DNA (249bp) protein (83aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JWI6_HYPDA
Uncharacterized protein {ECO:0000313|EMBL:ADJ23099.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_3666_curated_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24164..25033
DNA (870bp) protein (290aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRM2_9GAMM rbh
beta-1,4-xylanase rbh
SCNpilot_expt_1000_bf_scaffold_3666_curated_30
unknown

Not on your lists

comp(24982..25437)
DNA (456bp) protein (152aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

View Taxonomy