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SCNpilot_expt_1000_bf_scaffold_9877_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9877_curated_1
unknown

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3..158
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9877_curated_2
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(101..1294)
-----------------
DNA (1194bp)
protein (398aa)
glycosyltransferase n=1 Tax=Acetobacter aceti RepID=UPI0002260D07 rbh
Glycosyl transferase {ECO:0000313|EMBL:GAN58392.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
glycosyl transferase group 1 family protein rbh
SCNpilot_expt_1000_bf_scaffold_9877_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1291..2445)
-----------------
DNA (1155bp)
protein (385aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PPI9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41435.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
group 1 glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_9877_curated_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2457..3698)
-----------------
DNA (1242bp)
protein (414aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034A1F33 rbh
AMP-dependent synthetase and ligase rbh
SCNpilot_expt_1000_bf_scaffold_9877_curated_5
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4163..4879
-----------------
DNA (717bp)
protein (239aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035DE57E
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter related {ECO:0000313|EMBL:ACK49139.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_9877_curated_6
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4879..6198
-----------------
DNA (1320bp)
protein (440aa)
Uncharacterized protein {ECO:0000313|EMBL:GAJ30001.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein n=3 Tax=Acetobacter aceti RepID=UPI000361BF01
SCNpilot_expt_1000_bf_scaffold_9877_curated_7
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6195..7433
-----------------
DNA (1239bp)
protein (413aa)
Uncharacterized protein {ECO:0000313|EMBL:GAJ30002.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFM9_9BRAD
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9877_curated_8
unknown

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comp(7441..7590)
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9877_curated_9
bacterium YEK0313, Bacteria

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comp(7590..8018)
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:CEJ10512.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EKU6_9SPHI
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9877_curated_10
unknown

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comp(8019..8441)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9877_curated_11
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8721..9740)
-----------------
DNA (1020bp)
protein (340aa)
quinoprotein glucose dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B58636
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:AJR23598.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
glucose dehydrogenase (EC:1.1.5.2); K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2] rbh
SCNpilot_expt_1000_bf_scaffold_9877_curated_12
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9787..10743)
-----------------
DNA (957bp)
protein (319aa)
glucose dehydrogenase (EC:1.1.5.2); K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Glucose dehydrogenase n=1 Tax=Sphingobium indicum B90A RepID=I5B9W6_9SPHN
Glucose dehydrogenase {ECO:0000313|EMBL:EIM66368.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_expt_1000_bf_scaffold_9877_curated_trna_1
unknown

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comp(11180..11250)
-----------------
DNA (71bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_9877_curated_13
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11340..11669)
-----------------
DNA (330bp)
protein (110aa)
major facilitator transporter; K03761 MFS transporter, MHS family, alpha-ketoglutarate permease
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SXX4_CAUSK
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABZ70297.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_9877_curated_14
unknown

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11890..12147
-----------------
DNA (258bp)
protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9877_curated_15
unknown

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12202..12375
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9877_curated_16
unknown

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12388..12522
-----------------
DNA (135bp)
protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9877_curated_17
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12778..13041
-----------------
DNA (264bp)
protein (88aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U6E9_SINMW
Ppx/GppA phosphatase {ECO:0000313|EMBL:ABR59229.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 18 items

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