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SCNpilot_expt_1000_bf_scaffold_5118_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5118_curated_1
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..364)
DNA (363bp) protein (121aa)
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AQI9_MARMM
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABI65448.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_5118_curated_2
unknown

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579..848
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_3
unknown

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984..1688
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_4
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1507..1983)
DNA (477bp) protein (159aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
Ferredoxin, putative n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UHD2_9RHOB
FixH superfamily
SCNpilot_expt_1000_bf_scaffold_5118_curated_5
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1980..3530)
DNA (1551bp) protein (517aa)
Nitrogen fixation protein FixG {ECO:0000313|EMBL:KIF25322.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
(Fe-S)-binding protein n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B6B149 rbh
4Fe-4S ferredoxin rbh
SCNpilot_expt_1000_bf_scaffold_5118_curated_6
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3502..4368)
DNA (867bp) protein (289aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
cytochrome c oxidase cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III rbh
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QIS5_BRESC rbh
SCNpilot_expt_1000_bf_scaffold_5118_curated_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4368..4538)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036FF901
cytochrome c oxidase, cbb3-type, CcoQ subunit; K00407 cytochrome c oxidase cbb3-type subunit IV
Cytochrome c oxidase, cbb3-type, CcoQ subunit {ECO:0000313|EMBL:ADZ71632.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_5118_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4535..5263)
DNA (729bp) protein (243aa)
cbb3-type cytochrome c oxidase subunit II; K00405 cytochrome c oxidase cbb3-type subunit II rbh
Cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SVU7_CAUSK rbh
Cytochrome c oxidase, cbb3-type, subunit II {ECO:0000313|EMBL:ABZ71565.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_5118_curated_9
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5263..6414)
DNA (1152bp) protein (384aa)
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:BAQ16761.1}; EC=1.9.3.1 {ECO:0000313|EMBL:BAQ16761.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Cytochrome c oxidase subunit CcoN n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RK72_9RHIZ rbh
cbb3-type cytochrome c oxidase subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] rbh
SCNpilot_expt_1000_bf_scaffold_5118_curated_10
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7338..7604)
DNA (267bp) protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KJB94772.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
OmpW family protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L968_9PROT
ompW1; outer membrane W protein; K07275 outer membrane protein
SCNpilot_expt_1000_bf_scaffold_5118_curated_11
unknown

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7768..7860
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_12
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8131..8307
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003764418
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hemN; Oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
SCNpilot_expt_1000_bf_scaffold_5118_curated_13
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8361..9446
DNA (1086bp) protein (362aa)
hemN; oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
Coproporphyrinogen-III oxidase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I010_AZOC5 rbh
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_5118_curated_14
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9621..9917
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:AIB13639.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQD8_AZOBR
SCNpilot_expt_1000_bf_scaffold_5118_curated_15
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9997..10599)
DNA (603bp) protein (201aa)
Two-component, nitrogen fixation regulatory protein fixJ n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YIV4_MOBAS
Two-component, nitrogen fixation regulatory protein fixJ {ECO:0000313|EMBL:EAS50013.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
LuxR family transcriptional regulator; K14987 two-component system, LuxR family, response regulator FixJ
SCNpilot_expt_1000_bf_scaffold_5118_curated_16
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10605..12461)
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000375EAE6 rbh
PAS/PAC sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_5118_curated_17
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12631..13314
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037B9D85
Putative transcriptional regulator, crp family {ECO:0000313|EMBL:EAS51457.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
Crp/Fnr family transcriptional regulator; K15861 CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
SCNpilot_expt_1000_bf_scaffold_5118_curated_18
unknown

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comp(13392..13559)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_19
unknown

Not on your lists

comp(13626..13862)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_20
unknown

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14387..14578
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_21
unknown

Not on your lists

14708..14920
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5118_curated_22
unknown

Not on your lists

15044..15166
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 22 items

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