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SCNpilot_expt_1000_bf_scaffold_4181_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4181_curated_1
unknown

Not on your lists

comp(169..600)
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4181_curated_2
unknown

Not on your lists

comp(637..765)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4181_curated_3
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

968..1420
DNA (453bp) protein (151aa)
Flagellar hook-associated protein FlaN {ECO:0000313|EMBL:KIF23417.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellar hook-associated protein flgk; K02396 flagellar hook-associated protein 1 FlgK
Flagellar hook-associated protein FlgK n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RR84_ASTEC
SCNpilot_expt_1000_bf_scaffold_4181_curated_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1433..2377
DNA (945bp) protein (315aa)
flagellin; K02397 flagellar hook-associated protein 3 FlgL
Flagellin n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG81_PHEZH
Flagellin {ECO:0000313|EMBL:ACG77205.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_5
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2456..3553
DNA (1098bp) protein (366aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=MNMA_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_4181_curated_trna_1
unknown

Not on your lists

3666..3743
DNA (78bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_4181_curated_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3769..4986
DNA (1218bp) protein (406aa)
threonine dehydratase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E5B0F4 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig170, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50341.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] rbh
SCNpilot_expt_1000_bf_scaffold_4181_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5107..5595
DNA (489bp) protein (163aa)
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q786_RHOPT
Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ACE98774.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_8
unknown

Not on your lists

5680..5898
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4181_curated_9
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5900..6772)
DNA (873bp) protein (291aa)
MotA/TolQ/Exbb proton channel; K02556 chemotaxis protein MotA rbh
MotA/TolQ/ExbB proton channel n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VNG4_CAUST rbh
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:ADG12037.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_10
unknown

Not on your lists

comp(6883..7374)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4181_curated_11
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7371..7880)
DNA (510bp) protein (170aa)
Chemotaxis protein CheYIII n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HN16_9PROT
Chemotaxis protein CheYIII {ECO:0000313|EMBL:EKV31693.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_4181_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8516..9064
DNA (549bp) protein (183aa)
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:GAK45925.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
N-acetyltransferase GCN5 n=1 Tax=Methylobacterium sp. 88A RepID=UPI000379368F
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_4181_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9811..9981
DNA (171bp) protein (57aa)
putative hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ36_9SPHN
Putative hydrolase {ECO:0000313|EMBL:BAK65864.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_14
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10060..10236)
DNA (177bp) protein (59aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC43620.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B50134
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4181_curated_15
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10351..10581)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IKU4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12355.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10655..11056)
DNA (402bp) protein (134aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVB2_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS63845.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_17
unknown

Not on your lists

11298..11552
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4181_curated_18
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

11724..11927
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KJR41720.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
SCNpilot_expt_1000_bf_scaffold_4181_curated_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11991..12710)
DNA (720bp) protein (240aa)
membrane protein n=1 Tax=Methyloferula stellata RepID=UPI00035DC51D
Uncharacterized protein {ECO:0000313|EMBL:EFH13367.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
conserved membrane protein of unknown function
Displaying 20 items

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