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SCNpilot_expt_1000_bf_scaffold_6085_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6085_curated_1
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..450)
DNA (450bp) protein (150aa)
L-seryl-tRNA(ser) selenium transferase; K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA(Ser) selenium transferase protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3P8_SPHS2
L-seryl-tRNA(Ser) selenium transferase protein {ECO:0000313|EMBL:ADZ79508.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_6085_curated_2
unknown

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comp(899..1144)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_3
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1304..2680)
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036CE599 rbh
Peptidase M4 {ECO:0000313|EMBL:EYR66104.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
propeptide, PepSY amd peptidase M4 rbh
SCNpilot_expt_1000_bf_scaffold_6085_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2674..4713)
DNA (2040bp) protein (680aa)
TonB-dependent receptor-like protein; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISL3_9SPHN rbh
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK66373.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6085_curated_5
unknown

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comp(4778..5128)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_6
unknown

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comp(5171..5302)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_7
Asaia platycodi, Asaia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5412..5627)
DNA (216bp) protein (72aa)
MerR family transcriptional regulator n=1 Tax=Asaia sp. SF2.1 RepID=V8A4F3_9PROT
Heavy metal resistance transcriptional regulator HmrR {ECO:0000313|EMBL:CDG39857.1}; TaxID=1382230 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Asaia.;" source="Asaia platycodi SF2.1.;"
MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6085_curated_8
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5740..6312
DNA (573bp) protein (191aa)
Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CS55_SIDLE
SCNpilot_expt_1000_bf_scaffold_6085_curated_9
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6309..6920
DNA (612bp) protein (204aa)
NAD(P)H-binding protein, PF13460 family {ECO:0000313|EMBL:KCB40226.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
TrkA N-terminal domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X5L3_9BURK
Rrf2-linked NADH-flavin reductase
SCNpilot_expt_1000_bf_scaffold_6085_curated_trna_1
unknown

Not on your lists

comp(7247..7343)
DNA (97bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_6085_curated_10
unknown

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comp(7372..8142)
DNA (771bp) protein (257aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_11
unknown

Not on your lists

comp(8800..9846)
DNA (1047bp) protein (349aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_12
unknown

Not on your lists

comp(9935..10993)
DNA (1059bp) protein (353aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_13
unknown

Not on your lists

11416..11766
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12444..12935)
DNA (492bp) protein (164aa)
Integral membrane protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9DEG4_9RHOB
Integral membrane protein {ECO:0000313|EMBL:EJW09686.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6085_curated_15
unknown

Not on your lists

comp(13077..13274)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14248..14568)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR79533.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FWK1_9RHOB
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6085_curated_17
unknown

Not on your lists

comp(14571..14843)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6085_curated_18
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15471..16094
DNA (624bp) protein (208aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
cation transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489424
cation efflux protein
Displaying 19 items

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