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SCNpilot_expt_1000_bf_scaffold_2891_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2891_curated_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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3..605
DNA (603bp) protein (201aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
TPR repeat-containing protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B045
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2891_curated_2
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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822..1478
DNA (657bp) protein (219aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3ARZ3_9CAUL
LemA family protein; K03744 LemA protein
SCNpilot_expt_1000_bf_scaffold_2891_curated_3
unknown

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2674..2928
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2891_curated_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2964..4001
DNA (1038bp) protein (346aa)
gluconolactonase (EC:3.1.1.17); K01053 gluconolactonase [EC:3.1.1.17] rbh
Gluconolactonase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z7J4_SPHJU rbh
Gluconolactonase {ECO:0000313|EMBL:BAI98463.1}; EC=3.1.1.17 {ECO:0000313|EMBL:BAI98463.1};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_expt_1000_bf_scaffold_2891_curated_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3989..4540)
DNA (552bp) protein (184aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Putative methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IFA1_BORPD
SCNpilot_expt_1000_bf_scaffold_2891_curated_6
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4579..5460)
DNA (882bp) protein (294aa)
Mannose-6-phosphate isomerase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IVF9_9SPHN rbh
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:EQB32820.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2891_curated_trna_1
unknown

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comp(5560..5631)
DNA (72bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_2891_curated_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(5712..6761)
DNA (1050bp) protein (350aa)
hypothetical protein id=12554415 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84053.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_2891_curated_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(6758..7795)
DNA (1038bp) protein (346aa)
hypothetical protein id=12554415 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84053.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_2891_curated_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(7792..8877)
DNA (1086bp) protein (362aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022P7_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ABJ84053.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_2891_curated_10
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8957..10681
DNA (1725bp) protein (575aa)
metG; methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
Methionine--tRNA ligase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8J4_PHEZH rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_2891_curated_11
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10767..11498)
DNA (732bp) protein (244aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
arginyl-tRNA-protein transferase; K00685 arginine-tRNA-protein transferase [EC:2.3.2.8]
Putative arginyl-tRNA--protein transferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=ATE_PARL1
SCNpilot_expt_1000_bf_scaffold_2891_curated_12
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12572..12778
DNA (207bp) protein (69aa)
putative Flavin reductase, FMN-binding
Putative Flavin reductase, FMN-binding n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ANL8_AZOBR
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
Displaying 13 items

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