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SCNpilot_expt_1000_bf_scaffold_2088_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2088_curated_1
unknown

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3..86
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2088_curated_2
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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71..691
DNA (621bp) protein (207aa)
CDP-glucose 4,6-dehydratase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EFQ2_9RHOB
CDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ESW59803.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
CDP-glucose 4,6-dehydratase
SCNpilot_expt_1000_bf_scaffold_2088_curated_3
Pseudomonas sp. SHC52, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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642..1154
DNA (513bp) protein (171aa)
Similar to CDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:CDF95745.1}; EC=4.2.1.45 {ECO:0000313|EMBL:CDF95745.1};; TaxID=984195 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. SHC52.;"
rfbG; CDP-glucose 4,6-dehydratase (EC:4.2.1.45); K01709 CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
CDP-glucose-4,6-dehydratase n=1 Tax=Raphidiopsis brookii D9 RepID=D4TMJ8_9NOST
SCNpilot_expt_1000_bf_scaffold_2088_curated_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1199..2437
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036EF05A rbh
hypothetical protein rbh
Bll5978 protein {ECO:0000313|EMBL:BAC51243.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_expt_1000_bf_scaffold_2088_curated_5
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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2437..3384
DNA (948bp) protein (316aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Leptospira interrogans str. HAI1536 RepID=M6VVN5_LEPIR
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EMO53613.1}; TaxID=1193041 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira interrogans str. HAI1536.;"
SCNpilot_expt_1000_bf_scaffold_2088_curated_6
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3398..4537
DNA (1140bp) protein (380aa)
LPS biosynthesis protein WbpG n=6 Tax=cellular organisms RepID=UPI000375CCAF rbh
PP-loop domain-containing protein rbh
PP-loop domain protein {ECO:0000313|EMBL:ACL03017.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
SCNpilot_expt_1000_bf_scaffold_2088_curated_7
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

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4534..5148
DNA (615bp) protein (205aa)
hypothetical protein n=2 Tax=cellular organisms RepID=UPI0003810CF9
Tax=RBG_16_Planctomycetes_43_13_curated
imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-]
SCNpilot_expt_1000_bf_scaffold_2088_curated_8
GWA2_RIF03_38_11_curated, RIF3, Bacteria

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5148..5924
DNA (777bp) protein (259aa)
Tax=GWA2_RIF03_38_11_curated
hypothetical protein n=2 Tax=cellular organisms RepID=UPI000363BAAA rbh
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] rbh
SCNpilot_expt_1000_bf_scaffold_2088_curated_9
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5932..8034
DNA (2103bp) protein (701aa)
Dehydrogenase {ECO:0000313|EMBL:EZQ16916.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
dehydrogenase-like protein rbh
Dehydrogenase-like protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N514_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2088_curated_10
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8031..9659
DNA (1629bp) protein (543aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GWZ9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:AGA89834.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
SCNpilot_expt_1000_bf_scaffold_2088_curated_11
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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9822..10142
DNA (321bp) protein (107aa)
UDP-N-acetylglucosamine 4,6-dehydratase (EC:4.2.1.-); K01726 [EC:4.2.1.-]
UDP-N-acetylglucosamine 4,6-dehydratase n=1 Tax=Vibrio fischeri (strain ATCC 700601 / ES114) RepID=Q5E8L1_VIBF1
Tax=GWE2_Bacteroidetes_32_14_curated
SCNpilot_expt_1000_bf_scaffold_2088_curated_12
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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10155..11021
DNA (867bp) protein (289aa)
UDP-N-acetylglucosamine 4,6-dehydratase rbh
UDP-N-acetylglucosamine 4,6-dehydratase n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1S827_SHEAM rbh
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase {ECO:0000313|EMBL:EXI64208.1}; EC=4.2.1.135 {ECO:0000313|EMBL:EXI64208.1};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
SCNpilot_expt_1000_bf_scaffold_2088_curated_13
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12199..12399
DNA (201bp) protein (67aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDI5_9BURK
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CBA31298.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CBA31298.1};; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
wecB; UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
Displaying 13 items

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