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SCNpilot_expt_1000_bf_scaffold_3130_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3130_curated_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..368
DNA (366bp) protein (122aa)
hypothetical protein; K07090
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R7W1_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:ACG77494.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_3130_curated_2
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(436..1656)
DNA (1221bp) protein (407aa)
glucose sorbosone dehydrogenase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5DF1D rbh
glucose/sorbosone dehydrogenase rbh
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:AFL89040.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_expt_1000_bf_scaffold_3130_curated_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1778..2458)
DNA (681bp) protein (227aa)
phosphoglycolate phosphatase n=1 Tax=Methylocystis parvus RepID=UPI000382B39D
Phosphoglycolate phosphatase {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902}; Short=PGP {ECO:0000256|HAMAP-Rule:MF_00495};; Short=PGPase {ECO:0000256|HAMAP-Rule:MF_00495};; EC=3.1.3.18 {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
cbbZ; phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
SCNpilot_expt_1000_bf_scaffold_3130_curated_4
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2592..3878
DNA (1287bp) protein (429aa)
N-acetylglucosamine-1-phosphate uridyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000375F5E6 rbh
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.7.7.23); K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] rbh
SCNpilot_expt_1000_bf_scaffold_3130_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3878..5704
DNA (1827bp) protein (609aa)
glucosamine--fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] rbh
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXP1_PARL1 rbh
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=402881 species="Bacte
SCNpilot_expt_1000_bf_scaffold_3130_curated_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5996..6313)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036758EA
Uncharacterized protein {ECO:0000313|EMBL:ETU92630.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3130_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6401..7099
DNA (699bp) protein (233aa)
ribose-5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]
Ribose-5-phosphate isomerase A n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RPIA_NITHX
Ribose-5-phosphate isomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; EC=5.3.1.6 {ECO:0000255|HAMAP-Rule:MF_00170};; Phosphoriboisomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; Short=PRI {ECO:0000255|HAMAP-Rule:MF_00170};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_3130_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7096..8244)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XQI8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH08179.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3130_curated_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8328..9716
DNA (1389bp) protein (463aa)
glutathione reductase (EC:1.8.1.7); K00383 glutathione reductase (NADPH) [EC:1.8.1.7] rbh
NADPH-glutathione reductase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3STA6_NITWN rbh
NADPH-glutathione reductase {ECO:0000313|EMBL:ABA04485.1}; EC=1.8.1.7 {ECO:0000313|EMBL:ABA04485.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_3130_curated_10
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9729..11009)
DNA (1281bp) protein (427aa)
Sulfate permease {ECO:0000313|EMBL:KJC56592.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
sulfate transporter rbh
Sulphate transporter n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VG68_SPHWW rbh
SCNpilot_expt_1000_bf_scaffold_3130_curated_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11199..12578
DNA (1380bp) protein (460aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:GAK45850.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
aroF; 3-deoxy-7-phosphoheptulonate synthase rbh
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMH7_AZOBR rbh
SCNpilot_expt_1000_bf_scaffold_3130_curated_12
unknown

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12668..13426
DNA (759bp) protein (253aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3130_curated_13
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13577..14497
DNA (921bp) protein (307aa)
Oxidoreductase, Gfo/Idh/MocA family {ECO:0000313|EMBL:GAM96484.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
oxidoreductase domain-containing protein
Oxidoreductase domain protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1S1_CAUSK
SCNpilot_expt_1000_bf_scaffold_3130_curated_14
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14980..15312
DNA (333bp) protein (111aa)
NAD+ synthetase; K01916 NAD+ synthase [EC:6.3.1.5]
NAD+ synthetase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I837_RHOVT
NAD+ synthetase {ECO:0000313|EMBL:ADP71963.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
Displaying 14 items

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