ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3521_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3521_curated_1
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..478)
DNA (477bp) protein (159aa)
Putative Zn-dependent protease {ECO:0000313|EMBL:GAM99600.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Branched-chain amino acid transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H5T7_9BRAD
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3521_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

755..2161
DNA (1407bp) protein (469aa)
gamma-glutamyltranspeptidase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltranspeptidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HYA1_PARL1
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:ABS64884.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3521_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2357..5122)
DNA (2766bp) protein (922aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000369939D rbh
ribonuclease, Rne/Rng family rbh
SCNpilot_expt_1000_bf_scaffold_3521_curated_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5580..6245)
DNA (666bp) protein (222aa)
nuclease PIN n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039A666D
PKHD-type hydroxylase SCH01S_48_01170 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative hydroxylase
SCNpilot_expt_1000_bf_scaffold_3521_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6362..7720
DNA (1359bp) protein (453aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:GAK44628.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] rbh
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY99_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_3521_curated_6
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7878..9230)
DNA (1353bp) protein (451aa)
Tax=RBG_16_Gamma2_64_11_curated
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MPD7_9SPHN
SCNpilot_expt_1000_bf_scaffold_3521_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9675..10352
DNA (678bp) protein (226aa)
1A family penicillin-binding protein {ECO:0000313|EMBL:KFC70321.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Multimodular transpeptidase-transglycosylase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LJL7_9RHOB
1A family penicillin-binding protein (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
SCNpilot_expt_1000_bf_scaffold_3521_curated_8
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10538..11506
DNA (969bp) protein (323aa)
peptide chain release factor 2 n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BEB74 rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2 rbh
SCNpilot_expt_1000_bf_scaffold_3521_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11577..12092)
DNA (516bp) protein (172aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY95_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS64878.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3521_curated_10
unknown

Not on your lists

12232..12786
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3521_curated_11
unknown

Not on your lists

12802..13638
DNA (837bp) protein (279aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3521_curated_12
Brucella ovis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13580..14158)
DNA (579bp) protein (193aa)
Uncharacterized protein n=15 Tax=Brucella ovis RepID=N7NHF0_BRUOV
Uncharacterized protein {ECO:0000313|EMBL:ENT94764.1}; TaxID=1293916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ovis IntaBari-2002-82-58.;"
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
SCNpilot_expt_1000_bf_scaffold_3521_curated_13
unknown

Not on your lists

14340..14789
DNA (450bp) protein (150aa)

This feature has no annotations

Displaying 13 items

View Taxonomy