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SCNpilot_expt_1000_bf_scaffold_10850_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10850_curated_1
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(64..405)
DNA (342bp) protein (114aa)
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
recombinase RecR n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A31B6C
recR; recombination protein RecR; K06187 recombination protein RecR
SCNpilot_expt_1000_bf_scaffold_10850_curated_2
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(838..2436)
DNA (1599bp) protein (533aa)
DNA polymerase III subunit gamma/tau n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7FYY8_9RHIZ rbh
DNA polymerase III subunit gamma/tau {ECO:0000313|EMBL:ESZ75615.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ESZ75615.1};; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] rbh
SCNpilot_expt_1000_bf_scaffold_10850_curated_3
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2773..3666
DNA (894bp) protein (298aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22]
NUDIX hydrolase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QL54_BRESC
NUDIX hydrolase {ECO:0000313|EMBL:ADK99909.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_10850_curated_4
unknown

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comp(3743..4111)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10850_curated_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4168..4389
DNA (222bp) protein (74aa)
conserved membrane protein of unknown function
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQW4_AZOBR
Membrane protein {ECO:0000313|EMBL:AIB14056.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCNpilot_expt_1000_bf_scaffold_10850_curated_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4702..5571)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P2X1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35084.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
pirin domain-containing protein; K06911 rbh
SCNpilot_expt_1000_bf_scaffold_10850_curated_7
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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5668..5994
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000361B8C6
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
Transcriptional regulator, HxlR family
SCNpilot_expt_1000_bf_scaffold_10850_curated_8
unknown

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6046..6630
DNA (585bp) protein (195aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10850_curated_9
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6516..7373)
DNA (858bp) protein (286aa)
Prephenate dehydratase {ECO:0000313|EMBL:BAQ16217.1}; EC=4.2.1.51 {ECO:0000313|EMBL:BAQ16217.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Chorismate mutase/prephenate dehydratase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUL8_9BRAD rbh
prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51] rbh
SCNpilot_expt_1000_bf_scaffold_10850_curated_10
unknown

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comp(7370..7507)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10850_curated_11
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7520..8026)
DNA (507bp) protein (169aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=KDSB_RHOCS
SCNpilot_expt_1000_bf_scaffold_10850_curated_12
unknown

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8289..8483
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 12 items

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