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SCNpilot_expt_1000_bf_scaffold_4366_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4366_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..310)
DNA (309bp) protein (103aa)
HAD family hydrolase; K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HW2_RHOP5
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_4366_curated_2
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(839..1552)
DNA (714bp) protein (238aa)
Plasmid partitioning protein ParA {ECO:0000313|EMBL:KDR39025.1}; Polyphosphate glucokinase {ECO:0000313|EMBL:CDY74698.1}; EC=2.7.1.63 {ECO:0000313|EMBL:CDY74698.1};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
ROK family protein
ROK family protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4X050_9BURK
SCNpilot_expt_1000_bf_scaffold_4366_curated_3
Pseudomonas sp. M47T1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1539..2486)
DNA (948bp) protein (316aa)
Glycosyl hydrolase family protein n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N362_9PSED rbh
Glycosyl hydrolase family protein {ECO:0000313|EMBL:EIK95902.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
Glucoamylase (EC:3.2.1.3) rbh
SCNpilot_expt_1000_bf_scaffold_4366_curated_4
unknown

Not on your lists

3037..3138
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4366_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3296..4030)
DNA (735bp) protein (245aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
6-phosphogluconolactonase; K01057 6-phosphogluconolactonase [EC:3.1.1.31]
6-phosphogluconolactonase n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I0N0_GLUXN
SCNpilot_expt_1000_bf_scaffold_4366_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4027..5535)
DNA (1509bp) protein (503aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49) rbh
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QS17_9CYAN rbh
SCNpilot_expt_1000_bf_scaffold_4366_curated_7
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5532..6491)
DNA (960bp) protein (320aa)
6-phosphogluconate dehydrogenase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036D28FE rbh
6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:EIZ84998.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
6-phosphogluconate dehydrogenase (EC:1.1.1.44); K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44] rbh
SCNpilot_expt_1000_bf_scaffold_4366_curated_8
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6856..7452)
DNA (597bp) protein (199aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD80923.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
Uncharacterized protein n=1 Tax=Wolbachia endosymbiont of Drosophila simulans RepID=Q4E6U8_9RICK
SCNpilot_expt_1000_bf_scaffold_4366_curated_9
unknown

Not on your lists

comp(7687..7791)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4366_curated_10
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8021..9007
DNA (987bp) protein (329aa)
malate dehydrogenase (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q093I4_STIAD
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate {ECO:0000313|EMBL:ADO75967.1}; EC=1.1.1.40 {ECO:0000313|EMBL:ADO75967.1};; NADP-dependent malic enzyme {ECO:0000313|EMBL:EAU66888.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EAU66888.1};; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_1000_bf_scaffold_4366_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9037..9414
DNA (378bp) protein (126aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein
TPR repeat-containing protein n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BHI0_CHLPD
SCNpilot_expt_1000_bf_scaffold_4366_curated_12
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9371..11545
DNA (2175bp) protein (725aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF83527.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
Molybdate transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ILN5_9BRAD rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4366_curated_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11549..13639
DNA (2091bp) protein (697aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002EF46B1
TPR domain-containing protein {ECO:0000313|EMBL:EGP06148.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4366_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13636..14151)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037AF06E
Uncharacterized protein {ECO:0000313|EMBL:KFC67135.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cupin
SCNpilot_expt_1000_bf_scaffold_4366_curated_15
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14162..14866)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363A628 rbh
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:KEQ04190.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
kduD-2; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 2 (EC:1.1.1.127)
SCNpilot_expt_1000_bf_scaffold_4366_curated_16
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14913..15866
DNA (954bp) protein (318aa)
Bacterial luciferase family protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3APC3_9CAUL
Bacterial luciferase family protein {ECO:0000313|EMBL:GAD59569.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
luciferase family protein
SCNpilot_expt_1000_bf_scaffold_4366_curated_trna_1
unknown

Not on your lists

comp(15892..15964)
DNA (73bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_4366_curated_17
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16079..16657)
DNA (579bp) protein (193aa)
Rod shape-determining protein RodA {ECO:0000313|EMBL:GAK44818.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Rod shape-determining protein RodA n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GKP5_9PROT
mrdB; cell wall shape-determining protein; K05837 rod shape determining protein RodA
Displaying 18 items

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