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SCNpilot_expt_1000_bf_scaffold_9140_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9140_curated_1
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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2..277
DNA (276bp) protein (92aa)
Ppx/GppA phosphatase
Ppx/GppA phosphatase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4F2_9RHIZ
Exopolyphosphatase {ECO:0000313|EMBL:KIF12257.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_2
unknown

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comp(429..818)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_3
unknown

Not on your lists

1016..1231
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_4
unknown

Not on your lists

comp(2028..2228)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2369..2962
DNA (594bp) protein (198aa)
inosine-5'-monophosphate dehydrogenase; K00088 IMP dehydrogenase [EC:1.1.1.205]
inosine-5`-monophosphate dehydrogenase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035F4CBC
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2932..3144
DNA (213bp) protein (71aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5V2_9BRAD
guaB; inosine-5'-monophosphate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_9140_curated_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3245..3835)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003818E82
GDP-mannose pyrophosphatase {ECO:0000313|EMBL:KGM34652.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_9140_curated_8
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3866..4270)
DNA (405bp) protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB05826.1}; Flags: Precursor;; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AI6_POLSJ
SCNpilot_expt_1000_bf_scaffold_9140_curated_9
unknown

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4417..5082
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_10
unknown

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5152..5289
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5356..6642
DNA (1287bp) protein (429aa)
Fmu (Sun) domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] rbh
Fmu (Sun) domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSA7_PARL1 rbh
Fmu (Sun) domain protein {ECO:0000313|EMBL:ABS62790.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_12
unknown

Not on your lists

6635..7030
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7446..8525
DNA (1080bp) protein (360aa)
guaA; GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z568_AZOL4 rbh
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8590..9138)
DNA (549bp) protein (183aa)
hypothetical protein rbh
HhH-GPD domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJG2_OLICO rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05402.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9146..9355)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQM6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29765.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9140_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9352..9768)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKC6_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF18105.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9917..10708)
DNA (792bp) protein (264aa)
hypothetical protein; K06997 rbh
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138F1_RHOPS rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE39538.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_18
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10790..11416
DNA (627bp) protein (209aa)
MarR family transcriptional regulator rbh
MarR family transcriptional regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8G3_9SPHN rbh
MarR family transcriptional regulator {ECO:0000313|EMBL:AGH51981.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11413..11739
DNA (327bp) protein (109aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SNC6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AGH51982.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_20
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11785..12777)
DNA (993bp) protein (331aa)
Beta-lactamase n=1 Tax=Citreicella sp. SE45 RepID=D0CZ82_9RHOB rbh
Beta-lactamase {ECO:0000313|EMBL:EEX16918.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
beta-lactamase rbh
SCNpilot_expt_1000_bf_scaffold_9140_curated_21
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12932..13375)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003639A2C
Pseudoazurin {ECO:0000313|EMBL:EZQ13053.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
pseudoazurin
SCNpilot_expt_1000_bf_scaffold_9140_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13534..14349)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003638DC1 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX53601.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9140_curated_23
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14533..15198
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000381C252
FMN-binding protein {ECO:0000313|EMBL:KGD96460.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Regulator of nitric oxide reductase transcription
SCNpilot_expt_1000_bf_scaffold_9140_curated_24

Not on your lists

15162..16814
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000381C252 rbh
Putative NosR {ECO:0000313|EMBL:ACF98095.1}; TaxID=548897 species="Bacteria; environmental samples.;" source="uncultured bacterium 1042.;"
nosR; NosR regulatory protein rbh
SCNpilot_expt_1000_bf_scaffold_9140_curated_25
unknown

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comp(17767..17961)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9140_curated_26
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18230..18736
DNA (507bp) protein (169aa)
nosZ; nitrous-oxide reductase NosZ (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4] rbh
Nitrous-oxide reductase n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBU9_OLICO rbh
Nitrous-oxide reductase NosZ {ECO:0000313|EMBL:AEI07620.1}; EC=1.7.2.4 {ECO:0000313|EMBL:AEI07620.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_9140_curated_27

Not on your lists

18739..20103
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000360C112 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN71017.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
periplasmic copper-binding protein; K07218 nitrous oxidase accessory protein rbh
SCNpilot_expt_1000_bf_scaffold_9140_curated_28

Not on your lists

20553..20978
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036D6883
Putative copper ABC transporter ATP-binding protein NosF {ECO:0000313|EMBL:ACF98098.1}; TaxID=548897 species="Bacteria; environmental samples.;" source="uncultured bacterium 1042.;"
nosF; copper ABC transporter ATP-binding protein NosF; K01990 ABC-2 type transport system ATP-binding protein
Displaying 28 items

View Taxonomy