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SCNpilot_expt_1000_bf_scaffold_11736_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11736_curated_1
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..266)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN45927.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
SCNpilot_expt_1000_bf_scaffold_11736_curated_2
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(370..1836)
DNA (1467bp) protein (489aa)
Anthranilate synthase, aminase component n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GQY0_9PROT rbh
Anthranilate synthase, aminase component {ECO:0000313|EMBL:EKV28390.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
trpE; anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] rbh
SCNpilot_expt_1000_bf_scaffold_11736_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1833..3644)
DNA (1812bp) protein (604aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] rbh
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215B7_RHOPB rbh
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_11736_curated_4
Leisingera sp. ANG-M7, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3826..4584
DNA (759bp) protein (253aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1577902 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-M7.;"
triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Ruegeria sp. (strain TM1040) RepID=TPIS_RUEST
SCNpilot_expt_1000_bf_scaffold_11736_curated_5
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4652..5611
DNA (960bp) protein (320aa)
response regulator receiver protein
Response regulator receiver protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0APT9_MARMM
Response regulator receiver protein {ECO:0000313|EMBL:ABI65698.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_11736_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5846..6178
DNA (333bp) protein (111aa)
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:KFC68940.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
secG; preprotein translocase membrane subunit; K03075 preprotein translocase subunit SecG
Preprotein translocase membrane subunit n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4T7_AZOL4
SCNpilot_expt_1000_bf_scaffold_11736_curated_7
unknown

Not on your lists

comp(6811..6903)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11736_curated_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6984..7901
DNA (918bp) protein (306aa)
pyrG; CTP synthase; K01937 CTP synthase [EC:6.3.4.2] rbh
CTP synthase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4T8_AZOL4 rbh
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_11736_curated_9
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8076..8627)
DNA (552bp) protein (184aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TRV5_MARTH
Uncharacterized protein {ECO:0000313|EMBL:ADR22804.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
SCNpilot_expt_1000_bf_scaffold_11736_curated_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9151..9840
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037855AE
Periplasmic protein involved in polysaccharide export {ECO:0000313|EMBL:EJL34050.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein; K01991 polysaccharide export outer membrane protein
SCNpilot_expt_1000_bf_scaffold_11736_curated_11
unknown

Not on your lists

comp(9729..9983)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11736_curated_12
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10496..10780)
DNA (285bp) protein (95aa)
id=12550955 bin=BDI tax=BDI organism_group=Betaproteobacteria
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
SCNpilot_expt_1000_bf_scaffold_11736_curated_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11106..11525)
DNA (420bp) protein (140aa)
MAPEG family n=1 Tax=Caulobacter sp. AP07 RepID=J2GRA6_9CAUL
MAPEG family {ECO:0000313|EMBL:EJL32885.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
eicosanoid/glutathione metabolism membrane-associated protein
SCNpilot_expt_1000_bf_scaffold_11736_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11657..12931
DNA (1275bp) protein (425aa)
Enolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGS6_9RHIZ rbh
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
eno; enolase; K01689 enolase [EC:4.2.1.11] rbh
SCNpilot_expt_1000_bf_scaffold_11736_curated_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13259..13570
DNA (312bp) protein (104aa)
septum formation initiator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B604A0
Septum formation initiator {ECO:0000313|EMBL:AIT06055.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
septum formation initiator
SCNpilot_expt_1000_bf_scaffold_11736_curated_16
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13853..14083
DNA (231bp) protein (77aa)
pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJT7_METSB
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Displaying 16 items

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