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SCNpilot_expt_1000_bf_scaffold_4880_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4880_curated_1
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18..797)
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:EXI67469.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Rothia mucilaginosa (strain DY-18) RepID=D2NT66_ROTMD
SCNpilot_expt_1000_bf_scaffold_4880_curated_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2037..4010
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PYA7_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL32807.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4880_curated_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4272..4775
DNA (504bp) protein (168aa)
imidazole glycerol phosphate synthase n=1 Tax=Xanthobacteraceae RepID=UPI000374E50F
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-); K02501 glutamine amidotransferase [EC:2.4.2.-]
SCNpilot_expt_1000_bf_scaffold_4880_curated_4
unknown

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4785..5507
DNA (723bp) protein (241aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteob
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F5P7_9PROT rbh
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] rbh
SCNpilot_expt_1000_bf_scaffold_4880_curated_5
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5525..6403)
DNA (879bp) protein (293aa)
Chromosome partitioning protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AD25_9PROT rbh
Chromosome partitioning protein {ECO:0000313|EMBL:EME70414.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
ParB-like nuclease domain family; K03497 chromosome partitioning protein, ParB family
SCNpilot_expt_1000_bf_scaffold_4880_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6400..7179)
DNA (780bp) protein (260aa)
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein rbh
Cobyrinic acid ac-diamide synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSL3_PARL1 rbh
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ABS62896.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4880_curated_7
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7142..7846)
DNA (705bp) protein (235aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
gidB; glucose inhibited division protein B; Methyltransferase gidB
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG80_AZOBR
SCNpilot_expt_1000_bf_scaffold_4880_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7839..9758)
DNA (1920bp) protein (640aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IV58_RHOCS rbh
SCNpilot_expt_1000_bf_scaffold_4880_curated_9
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9801..10775)
DNA (975bp) protein (325aa)
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] rbh
tRNA modification GTPase MnmE n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IV57_RHOCS rbh
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_4880_curated_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11086..11352)
DNA (267bp) protein (89aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG76_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:CCC96611.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_4880_curated_11
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11349..12254)
DNA (906bp) protein (302aa)
Double-stranded RNA 3'-methylase n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2PCB1_9PSEU
Double-stranded RNA 3'-methylase {ECO:0000313|EMBL:EMD21983.1}; TaxID=1238180 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
SCNpilot_expt_1000_bf_scaffold_4880_curated_12
unknown

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comp(12221..12409)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4880_curated_13
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13239..13457
DNA (219bp) protein (73aa)
Thymidylate kinase {ECO:0000313|EMBL:KJR66029.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_expt_1000_bf_scaffold_4880_curated_14
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13566..14621
DNA (1056bp) protein (352aa)
hypothetical protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5] rbh
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D9Y7_LARHH rbh
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:ACO73100.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
SCNpilot_expt_1000_bf_scaffold_4880_curated_15
Loktanella sp. S4079, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14818..15006)
DNA (189bp) protein (63aa)
Transcription termination factor Rho n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9S2J2_9RHOB
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=579483 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella sp. S4079.;"
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
Displaying 15 items

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