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SCNpilot_expt_1000_bf_scaffold_10934_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10934_curated_1

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comp(3..278)
DNA (276bp) protein (92aa)
Oligopeptide ABC transporter n=1 Tax=uncultured bacterium BLR7 RepID=C0INR1_9BACT
Oligopeptide ABC transporter {ECO:0000313|EMBL:ACN58947.1}; TaxID=506523 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR7.;"
oppA2; oligopeptide ABC transporter periplasmic oligopeptide-binding protein OppA; K15580 oligopeptide transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_10934_curated_2
unknown

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474..671
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10934_curated_3
unknown

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855..1424
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10934_curated_4

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comp(1438..3201)
DNA (1764bp) protein (588aa)
Oligopeptide transport system permease protein oppB n=1 Tax=uncultured bacterium BLR7 RepID=C0INR0_9BACT rbh
Oligopeptide transport system permease protein oppB {ECO:0000313|EMBL:ACN58946.1}; TaxID=506523 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR7.;"
peptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_10934_curated_5
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3201..3359)
DNA (159bp) protein (53aa)
oppC; oligopeptide transport system permease OppC; K15582 oligopeptide transport system permease protein
Oligopeptide transport system permease protein OppC n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWQ1_RHOCS
Oligopeptide transport system permease protein OppC {ECO:0000313|EMBL:ACJ00725.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_10934_curated_6

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comp(3356..4126)
DNA (771bp) protein (257aa)
ABC-type dipeptide/oligopeptide/nickel transport system n=1 Tax=uncultured bacterium BLR7 RepID=C0INQ9_9BACT rbh
ABC-type dipeptide/oligopeptide/nickel transport system {ECO:0000313|EMBL:ACN58945.1}; TaxID=506523 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR7.;"
dipeptide/oligopeptide/nickel ABC transporter permease; K15582 oligopeptide transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_10934_curated_7
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4123..5046)
DNA (924bp) protein (308aa)
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO43708.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
Binding-protein-dependent transport systems inner membrane component n=1 Tax=uncultured bacterium BLR7 RepID=C0INQ8_9BACT rbh
oppB; oligopeptide transport system permease OppB; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_10934_curated_8

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comp(5043..6122)
DNA (1080bp) protein (360aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=uncultured bacterium BLR7 RepID=C0INQ7_9BACT
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:ACN58943.1}; TaxID=506523 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR7.;"
extracellular solute-binding protein family 1; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_10934_curated_9
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6154..6924)
DNA (771bp) protein (257aa)
OmpA family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS57_9PROT
OmpA family protein {ECO:0000313|EMBL:EFH09863.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
SCNpilot_expt_1000_bf_scaffold_10934_curated_trna_1
unknown

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7078..7151
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_10934_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7316..7654
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQH2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30669.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
Displaying 11 items

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