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SCNpilot_expt_1000_bf_scaffold_5749_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5749_curated_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21..320)
DNA (300bp) protein (100aa)
Isochorismatase hydrolase n=1 Tax=Sphingomonas sp. LH128 RepID=J8SBD3_9SPHN
Isochorismatase hydrolase {ECO:0000313|EMBL:EZP82745.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_5749_curated_2
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(636..1685)
DNA (1050bp) protein (350aa)
nitrilotriacetate monooxygenase (EC:1.14.13.-); K09018 pyrimidine oxygenase [EC:1.14.99.46] rbh
Nitrilotriacetate monooxygenase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3S3_CAUCN rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK23153.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1771..2745)
DNA (975bp) protein (325aa)
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRT0_PARL1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS62613.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2980..3687)
DNA (708bp) protein (236aa)
GntR family transcriptional regulator n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000368E877
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5749_curated_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3812..4771)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC630
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCNpilot_expt_1000_bf_scaffold_5749_curated_6
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4835..6529)
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000369C15B
Glucose dehydrogenase, PQQ-dependent {ECO:0000313|EMBL:ESR22852.1}; EC=1.1.5.2 {ECO:0000313|EMBL:ESR22852.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
quinoprotein glucose dehydrogenase
SCNpilot_expt_1000_bf_scaffold_5749_curated_7
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6732..7118)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003738A40
Uncharacterized protein {ECO:0000313|EMBL:EAR51114.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_8
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7221..8156)
DNA (936bp) protein (312aa)
Amidohydrolase 2 n=1 Tax=Rhodopirellula europaea SH398 RepID=M5SFZ0_9PLAN
Amidohydrolase 2 {ECO:0000313|EMBL:EMI26617.1}; TaxID=1263868 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
hypothetical protein; K07046
SCNpilot_expt_1000_bf_scaffold_5749_curated_9
unknown

Not on your lists

comp(8258..8509)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5749_curated_10
unknown

Not on your lists

comp(8581..8892)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5749_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8994..9296)
DNA (303bp) protein (101aa)
xylose isomerase family protein
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REP1_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:AAK23607.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_12
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9853..11466)
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00038195BC rbh
Carboxylic ester hydrolase {ECO:0000256|RuleBase:RU361235}; EC=3.1.1.- {ECO:0000256|RuleBase:RU361235};; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein; K03929 para-nitrobenzyl esterase [EC:3.1.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_5749_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11635..12396
DNA (762bp) protein (254aa)
Molybdate ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKL3_AFIFE
Molybdate ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EKS28100.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5749_curated_14
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12421..12774)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AVR0_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL38359.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein; K09978 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5749_curated_15
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12803..12988)
DNA (186bp) protein (62aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T682_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:ABZ74085.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_16
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13025..13504)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EA37_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ82348.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5749_curated_17
unknown

Not on your lists

14584..15111
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5749_curated_18
unknown

Not on your lists

15142..15582
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5749_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15801..16283)
DNA (483bp) protein (161aa)
Putative D-galactarate dehydratase/Altronate hydrolase {ECO:0000313|EMBL:KFC74347.1}; EC=4.2.1.42 {ECO:0000313|EMBL:KFC74347.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000377A7A4
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7]
SCNpilot_expt_1000_bf_scaffold_5749_curated_20
unknown

Not on your lists

16510..16728
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5749_curated_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(17286..18407)
DNA (1122bp) protein (374aa)
Beta-lactamase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWE7_9BACT rbh
Beta-lactamase {ECO:0000313|EMBL:EDY21739.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
beta-lactamase rbh
SCNpilot_expt_1000_bf_scaffold_5749_curated_22
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18552..19475
DNA (924bp) protein (308aa)
5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003678052 rbh
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
5-dehydro-4-deoxyglucarate dehydratase; K01707 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] rbh
SCNpilot_expt_1000_bf_scaffold_5749_curated_23
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19889..20428
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000381593B
Transcriptional regulator {ECO:0000313|EMBL:EJL20751.1}; Flags: Precursor; Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_5749_curated_24
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20552..21877
DNA (1326bp) protein (442aa)
D-galactonate transporter n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DIF7_SPHYA rbh
D-galactonate transporter {ECO:0000313|EMBL:EKU77240.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
D-galactonate transporter; K08194 MFS transporter, ACS family, D-galactonate transporter rbh
SCNpilot_expt_1000_bf_scaffold_5749_curated_25
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21895..23244
DNA (1350bp) protein (450aa)
glucarate dehydratase n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003708317 rbh
gudD; glucarate dehydratase (EC:4.2.1.40); K01706 glucarate dehydratase [EC:4.2.1.40] rbh
Glucarate dehydratase {ECO:0000313|EMBL:BAI74001.1}; EC=4.2.1.40 {ECO:0000313|EMBL:BAI74001.1};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_26
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24173..24889
DNA (717bp) protein (239aa)
Galactarate dehydratase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y0V5_9RHIZ rbh
UxaA protein {ECO:0000313|EMBL:BAQ47346.1}; EC=4.2.1.42 {ECO:0000313|EMBL:BAQ47346.1};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
galactarate dehydratase; K01708 galactarate dehydratase [EC:4.2.1.42] rbh
SCNpilot_expt_1000_bf_scaffold_5749_curated_27
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24987..25823)
DNA (837bp) protein (279aa)
GMC-type oxidoreductase (EC:1.1.99.-); K00119 [EC:1.1.99.-] rbh
GMC-type oxidoreductase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YRD3_BRASO rbh
GMC-type oxidoreductase {ECO:0000313|EMBL:CAL76459.1}; EC=1.1.99.- {ECO:0000313|EMBL:CAL76459.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_expt_1000_bf_scaffold_5749_curated_28
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25778..26119)
DNA (342bp) protein (114aa)
GMC-type oxidoreductase (EC:1.1.99.-); K00119 [EC:1.1.99.-]
GMC-type oxidoreductase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EG11_BRASB
GMC-type oxidoreductase {ECO:0000313|EMBL:ABQ35105.1}; EC=1.1.99.- {ECO:0000313|EMBL:ABQ35105.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying 28 items

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