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SCNpilot_expt_1000_bf_scaffold_7856_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7856_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1185
-----------------
DNA (1185bp)
protein (395aa)
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein n=2 Tax=Sphingobium RepID=D4Z7J9_SPHJU
TonB-dependent receptor {ECO:0000313|EMBL:AJP72660.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_7856_curated_trna_1
unknown

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1410..1481
-----------------
DNA (72bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_7856_curated_2
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1571..2125
-----------------
DNA (555bp)
protein (185aa)
Conserved domain protein {ECO:0000313|EMBL:GAN55326.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
hypothetical protein
Putative uncharacterized protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KBS7_NITWC
SCNpilot_expt_1000_bf_scaffold_7856_curated_3
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2136..2441)
-----------------
DNA (306bp)
protein (102aa)
regulatory protein ArsR
Regulatory protein ArsR n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1U2_RHOVT
Regulatory protein ArsR {ECO:0000313|EMBL:ADP70161.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_7856_curated_4
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2498..2851
-----------------
DNA (354bp)
protein (118aa)
Alkylhydroperoxidase n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NK32_9CAUL
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1282361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7856_curated_5
unknown

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2986..3360
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7856_curated_6
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3480..4274)
-----------------
DNA (795bp)
protein (265aa)
Alcohol dehydrogenase (EC:1.1.1.1) rbh
Alcohol dehydrogenase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VLB9_9PROT rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:AGH98911.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AGH98911.1};; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
SCNpilot_expt_1000_bf_scaffold_7856_curated_7
unknown

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4313..4492
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7856_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4685..5212
-----------------
DNA (528bp)
protein (176aa)
inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7II95_XANP2
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_7856_curated_9
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5319..5825
-----------------
DNA (507bp)
protein (169aa)
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
hypothetical protein
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G2Q4_HERAR
SCNpilot_expt_1000_bf_scaffold_7856_curated_10
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5980..6576
-----------------
DNA (597bp)
protein (199aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C142C7
protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
SCNpilot_expt_1000_bf_scaffold_7856_curated_11
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6578..8140
-----------------
DNA (1563bp)
protein (521aa)
alpha-glucosyltransferase; K01187 alpha-glucosidase [EC:3.2.1.20] rbh
Alpha-glucosyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA44_PHEZH rbh
Alpha-glucosyltransferase {ECO:0000313|EMBL:ACG79548.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_7856_curated_12
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8099..8395)
-----------------
DNA (297bp)
protein (99aa)
Iron-sulfur cluster assembly scaffold protein IscU {ECO:0000313|EMBL:KIL99395.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
hypothetical protein
Uncharacterized protein n=7 Tax=Rhodobacter capsulatus RepID=D5ATX4_RHOCB
SCNpilot_expt_1000_bf_scaffold_7856_curated_13
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8586..9023)
-----------------
DNA (438bp)
protein (146aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000305C9B3
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_7856_curated_14
unknown

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9199..9732
-----------------
DNA (534bp)
protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7856_curated_15
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9971..10783)
-----------------
DNA (813bp)
protein (271aa)
DNA-binding response regulator n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RLL1_9RHIZ rbh
DNA-binding response regulator {ECO:0000313|EMBL:ESR24135.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
chemotaxis protein CheY; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_expt_1000_bf_scaffold_7856_curated_16
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11070..11258
-----------------
DNA (189bp)
protein (63aa)
Cold-shock protein n=2 Tax=Labrenzia RepID=U7GJH1_9RHOB
Cold-shock protein {ECO:0000313|EMBL:ERP96791.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Displaying 17 items

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