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SCNpilot_expt_1000_bf_scaffold_4859_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4859_curated_1
unknown

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comp(165..308)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4859_curated_2
Meyerozyma guilliermondii, Meyerozyma, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

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comp(1122..1574)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Eimeria brunetti RepID=U6LX11_9EIME
Putative uncharacterized protein {ECO:0000313|EMBL:EDK37104.2}; TaxID=294746 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Meyerozyma.;" source="Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM; 1539 / NBRC 10279 / NRRL Y-324) (Yeast) (Candida guilliermondii).;"
SCNpilot_expt_1000_bf_scaffold_4859_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2306..3940
DNA (1635bp) protein (545aa)
(glutamate--ammonia-ligase) adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] rbh
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN6_PARL1 rbh
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / D
SCNpilot_expt_1000_bf_scaffold_4859_curated_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3915..4979)
DNA (1065bp) protein (355aa)
Spermidine/putrescine ABC transporter ATPase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KGD1_9PROT rbh
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
spermidine/putrescine ABC transporter ATP-binding subunit rbh
SCNpilot_expt_1000_bf_scaffold_4859_curated_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4980..5777)
DNA (798bp) protein (266aa)
Spermidine/putrescine ABC transporter permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2J0G1_9PROT rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EKE76396.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
spermidine/putrescine ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_4859_curated_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5774..6658)
DNA (885bp) protein (295aa)
Spermidine/putrescine ABC transporter permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPB6_9PROT rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EKE76397.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
spermidine/putrescine ABC transporter permease; K02054 putative spermidine/putrescine transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4859_curated_trna_1
unknown

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6822..6893
DNA (72bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_4859_curated_7
unknown

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7429..7656
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4859_curated_8
unknown

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7729..8016
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4859_curated_9
unknown

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8182..8508
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4859_curated_10
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8484..10361
DNA (1878bp) protein (626aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI000362E475 rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EGL54747.1}; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga aminisulfidivorans MP.;"
methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_4859_curated_11
unknown

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10389..10652
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4859_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10649..11017
DNA (369bp) protein (123aa)
Response regulator receiver domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q9R1_BREDI
Response regulator receiver domain protein {ECO:0000313|EMBL:EKY24714.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_4859_curated_13
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11026..13242
DNA (2217bp) protein (739aa)
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] rbh
CheA signal transduction histidine kinase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QNZ3_BRESC rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_4859_curated_14
unknown

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comp(13226..13414)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4859_curated_15
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13569..13925
DNA (357bp) protein (119aa)
Chemotaxis protein methyltransferase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AN94_9CAUL
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
Displaying 16 items

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