ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2776_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2776_curated_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..431)
DNA (429bp) protein (143aa)
FIG003603: membrane protein, putative {ECO:0000313|EMBL:CDO58770.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E178_9RHOB
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2776_curated_2
unknown

Not on your lists

634..915
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2776_curated_3
unknown

Not on your lists

967..1128
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2776_curated_4
unknown

Not on your lists

1201..1527
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2776_curated_5
unknown

Not on your lists

1612..2133
DNA (522bp) protein (174aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2776_curated_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2134..2910)
DNA (777bp) protein (259aa)
Uncharacterized protein {ECO:0000313|EMBL:EWY41158.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SED7_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2776_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3021..4034)
DNA (1014bp) protein (338aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase associated with various cellular activities AAA_3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVB5_PARL1 rbh
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ABS63848.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_2776_curated_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4155..4787
DNA (633bp) protein (211aa)
Nudix hydrolase
Uncharacterized Nudix hydrolase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NUN7_AZOS1
Uncharacterized Nudix hydrolase {ECO:0000313|EMBL:BAI72116.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_2776_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5770..6096
DNA (327bp) protein (109aa)
tRNA nucleotidyltransferase {ECO:0000313|EMBL:CDO58765.1}; EC=2.7.7.72 {ECO:0000313|EMBL:CDO58765.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
polynucleotide adenylyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19]
Polynucleotide adenylyltransferase region n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVB8_PARL1
SCNpilot_expt_1000_bf_scaffold_2776_curated_10
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6093..7049
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000382675C
Uncharacterized protein {ECO:0000313|EMBL:GAM98723.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2776_curated_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7217..7819)
DNA (603bp) protein (201aa)
Integral membrane protein, YjbE family n=1 Tax=Rhizobium sp. CF122 RepID=J3BK41_9RHIZ
Integral membrane protein, YjbE family {ECO:0000313|EMBL:EJL53091.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
TerC family transmembrane efflux protein
SCNpilot_expt_1000_bf_scaffold_2776_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7838..8323)
DNA (486bp) protein (162aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GPL7_9PROT
putative tRNA/rRNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
SCNpilot_expt_1000_bf_scaffold_2776_curated_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8583..9152
DNA (570bp) protein (190aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035D0CE9
fbcF; ubiquinol-cytochrome c reductase iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
SCNpilot_expt_1000_bf_scaffold_2776_curated_14
alpha proteobacterium RS24, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9164..10417
DNA (1254bp) protein (418aa)
cytochrome B n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039FB7DB rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
cytochrome b/b6 domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2776_curated_15
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10426..11262
DNA (837bp) protein (279aa)
PREDICTED: cytochrome c1, heme protein, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A17D
Cytochrome C {ECO:0000313|EMBL:EWY41148.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
cytochrome b/c1; K00410 ubiquinol-cytochrome c reductase cytochrome b/c1 subunit
SCNpilot_expt_1000_bf_scaffold_2776_curated_16
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11340..12221
DNA (882bp) protein (294aa)
methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] rbh
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVC6_PARL1 rbh
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_expt_1000_bf_scaffold_2776_curated_17
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12317..12844
DNA (528bp) protein (176aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase n=1 Tax=Maricaulis maris (strain MCS10) RepID=APT_MARMM
SCNpilot_expt_1000_bf_scaffold_2776_curated_18
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12910..13506
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ57854.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantica.;"
Glutathione S-transferase family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TNP3_9PROT
glutathione S-transferase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2776_curated_19
unknown

Not on your lists

13850..14626
DNA (777bp) protein (259aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678, ECO:0000313|EMBL:CPR20019.1}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678, ECO:0000313|EMBL:CPR20019.1};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003782892 rbh
mtnA; methylthioribose-1-phosphate isomerase; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] rbh
SCNpilot_expt_1000_bf_scaffold_2776_curated_20
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14631..16694
DNA (2064bp) protein (688aa)
short chain dehydrogenase rbh
Hypothetical oxidoreductase yuxG n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WAP0_MAGSA rbh
Hypothetical oxidoreductase yuxG {ECO:0000313|EMBL:BAE49085.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_expt_1000_bf_scaffold_2776_curated_21
unknown

Not on your lists

17257..17448
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2776_curated_22
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17485..17931
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KBN9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGH00209.1}; TaxID=434085 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
SCNpilot_expt_1000_bf_scaffold_2776_curated_23
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18109..18768)
DNA (660bp) protein (220aa)
Peptidyl-tRNA hydrolase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FW31_PHAMO
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
peptidyl-tRNA hydrolase
SCNpilot_expt_1000_bf_scaffold_2776_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18839..19501)
DNA (663bp) protein (221aa)
50S ribosomal protein L25 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NT79_AFIFE
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25
SCNpilot_expt_1000_bf_scaffold_2776_curated_25
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19656..20063
DNA (408bp) protein (136aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YD31_MESOW
Uncharacterized protein {ECO:0000313|EMBL:AEH85566.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2776_curated_26
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20086..20721)
DNA (636bp) protein (212aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
glutathione S-transferase n=1 Tax=Rhizobium phaseoli RepID=UPI0003076A3D
gstB1; glutathione S-transferase (EC:2.5.1.18)
SCNpilot_expt_1000_bf_scaffold_2776_curated_27
Alcanivorax sp. DG881, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20853..20993)
DNA (141bp) protein (47aa)
Ribose-phosphate pyrophosphokinase n=1 Tax=Alcanivorax sp. DG881 RepID=B4WWQ8_9GAMM
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=236097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="
ribose-phosphate pyrophosphokinase
SCNpilot_expt_1000_bf_scaffold_2776_curated_28
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20999..21514)
DNA (516bp) protein (172aa)
Ribose-phosphate pyrophosphokinase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A720_9PROT
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacte
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
SCNpilot_expt_1000_bf_scaffold_2776_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21906..22730)
DNA (825bp) protein (275aa)
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K05810 conserved hypothetical protein
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQL0_METS4
SCNpilot_expt_1000_bf_scaffold_2776_curated_30
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22727..23842)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000360A25A rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCJ08805.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
Displaying items 1-30 of 35 in total

View Taxonomy