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SCNpilot_expt_1000_bf_scaffold_1953_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1953_curated_1
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..535
DNA (534bp) protein (178aa)
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:CDX16812.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A40CD
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
SCNpilot_expt_1000_bf_scaffold_1953_curated_2
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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739..1599
DNA (861bp) protein (287aa)
plasmid partitioning protein ParA n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039EA698
chromosome partitioning ATPase; K03496 chromosome partitioning protein
ATPases involved in chromosome partitioning-like protein {ECO:0000313|EMBL:ABI66458.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_1953_curated_3
unknown

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1596..1973
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1953_curated_4
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1970..2350)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI000362C43B
Membrane protein {ECO:0000313|EMBL:AIB12150.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1953_curated_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2488..3636
DNA (1149bp) protein (383aa)
galactonate dehydratase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FA6668 rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:AHG91845.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
galactonate dehydratase; K01684 galactonate dehydratase [EC:4.2.1.6] rbh
SCNpilot_expt_1000_bf_scaffold_1953_curated_6
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3690..4982
DNA (1293bp) protein (431aa)
Major facilitator superfamily transporter phthalate permease {ECO:0000313|EMBL:BAP44520.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D67A08 rbh
glucarate transporter; K08194 MFS transporter, ACS family, D-galactonate transporter rbh
SCNpilot_expt_1000_bf_scaffold_1953_curated_7
unknown

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comp(4992..5912)
DNA (921bp) protein (307aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1953_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6109..7248)
DNA (1140bp) protein (380aa)
D-mannonate dehydratase n=1 Tax=Caulobacter sp. AP07 RepID=J2QC42_9CAUL rbh
Mannonate dehydratase {ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|SAAS:SAAS00189414};; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
D-mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
SCNpilot_expt_1000_bf_scaffold_1953_curated_9
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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comp(7286..8044)
DNA (759bp) protein (253aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
molybdate ABC transporter periplasmic protein; K02020 molybdate transport system substrate-binding protein
ABC-type molybdate transport system periplasmic component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HTW2_AZOC5
SCNpilot_expt_1000_bf_scaffold_1953_curated_10
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8186..8671
DNA (486bp) protein (162aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9X7_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:ACG79481.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_1953_curated_11
Glycine soja, Glycine, Fabales, rosids, Streptophyta, Viridiplantae

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8695..9609
DNA (915bp) protein (305aa)
glyoxylate/hydroxypyruvate reductase A HPR2-like rbh
PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2-like n=1 Tax=Fragaria vesca subsp. vesca RepID=UPI0002C350A6 rbh
Glyoxylate reductase {ECO:0000313|EMBL:KHN04209.1}; EC=1.1.1.26 {ECO:0000313|EMBL:KHN04209.1};; TaxID=3848 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja.;" source="Glycine soja (Wild soybean).;"
SCNpilot_expt_1000_bf_scaffold_1953_curated_12
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10085..10915
DNA (831bp) protein (277aa)
Flagellin n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4P9X1_9CAUL rbh
Flagellin {ECO:0000313|EMBL:ESQ90687.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
flagellin domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1953_curated_13
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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11305..12132
DNA (828bp) protein (276aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A05C03 rbh
Flagellin {ECO:0000313|EMBL:KIF26036.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellin domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1953_curated_14
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12803..13780)
DNA (978bp) protein (326aa)
biotin carboxylase rbh
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A5I9_PELCD rbh
Uncharacterized protein {ECO:0000313|EMBL:ABA88368.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
Displaying 14 items

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