ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8510_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8510_curated_1
unknown

Not on your lists

comp(54..770)
DNA (717bp) protein (239aa)
id=12550402 bin=BDI tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_8510_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

973..1716
DNA (744bp) protein (248aa)
Strain MEJ076 contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02290.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Tmonovalent cation:proton antiporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKY5_9RHIZ rbh
phaA; putative monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A rbh
SCNpilot_expt_1000_bf_scaffold_8510_curated_3
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1716..2054
DNA (339bp) protein (113aa)
Cation:proton antiporter n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H373_9SPHN
Cation:proton antiporter {ECO:0000313|EMBL:EQB10806.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
SCNpilot_expt_1000_bf_scaffold_8510_curated_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2051..3670
DNA (1620bp) protein (540aa)
Na(+) H(+) antiporter subunit D {ECO:0000313|EMBL:EZP74426.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G1X2_9SPHN rbh
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05561 multicomponent K+:H+ antiporter subunit D rbh
SCNpilot_expt_1000_bf_scaffold_8510_curated_5
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3667..4152
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EDA4E1
Cation:proton antiporter {ECO:0000313|EMBL:EQA97671.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
multisubunit Na+/H+ antiporter, MnhE subunit
SCNpilot_expt_1000_bf_scaffold_8510_curated_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4149..4430
DNA (282bp) protein (94aa)
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
Multisubunit potassium/proton antiporter, PhaF subunit n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SP80_NITWN
Multisubunit potassium/proton antiporter, PhaF subunit {ECO:0000313|EMBL:ABA05911.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_8510_curated_7
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4427..4798
DNA (372bp) protein (124aa)
potassium:proton antiporter n=1 Tax=Sphingobium chinhatense RepID=UPI00037508F7
Potassium:proton antiporter {ECO:0000313|EMBL:EPR17703.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
phaG; ph adaptation potassium efflux system protein G
SCNpilot_expt_1000_bf_scaffold_8510_curated_8
unknown

Not on your lists

comp(4819..5133)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8510_curated_trna_1
unknown

Not on your lists

comp(5042..5121)
DNA (80bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_8510_curated_9
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5191..5376)
DNA (186bp) protein (62aa)
DNA gyrase inhibitor YacG n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CB97_9RHOB
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
hypothetical protein; K09862 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8510_curated_10
unknown

Not on your lists

comp(5363..5533)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8510_curated_11
unknown

Not on your lists

5761..6279
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8510_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6394..6972)
DNA (579bp) protein (193aa)
Maf-like protein P409_18005 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
septum formation protein Maf n=1 Tax=Ponticaulis koreensis RepID=UPI0003B358F2
septum formation protein Maf; K06287 septum formation protein
SCNpilot_expt_1000_bf_scaffold_8510_curated_13
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(7095..7316)
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Ahrensia kielensis RepID=UPI00035E1870
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_8510_curated_14
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7397..7681)
DNA (285bp) protein (95aa)
Arsenate reductase {ECO:0000313|EMBL:CDO60262.1}; EC=1.20.4.1 {ECO:0000313|EMBL:CDO60262.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
protein-tyrosine phosphatase
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VM45_CAUST
SCNpilot_expt_1000_bf_scaffold_8510_curated_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7833..8264)
DNA (432bp) protein (144aa)
UPF0262 protein M2A_3019 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
UPF0262 protein Plav_0522 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQG2_PARL1
Displaying 16 items

View Taxonomy