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SCNpilot_expt_1000_bf_scaffold_6735_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6735_curated_1
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..442)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NZG5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ81291.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6735_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(888..1838)
DNA (951bp) protein (317aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=LIPA_PARL1 rbh
Lipoyl synthase {ECO:0000255|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000255|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000255|HAMAP-Rule:MF_00206}; Short=LS {ECO:0000255|HAMAP-Rule:MF_00206};; Lipoate synthase {ECO:0000255|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000255|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000255|HAMAP-Rule:MF_00206}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (str
SCNpilot_expt_1000_bf_scaffold_6735_curated_3
Hyphomonas neptunium, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1985..3982
DNA (1998bp) protein (666aa)
aas; 2-acylglycerophosphoethanolamine acyltransferase (EC:2.3.1.40 6.2.1.20); K05939 acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] rbh
2-acylglycerophosphoethanolamine acyltransferase/Acyl-[acyl-carrier-protein] synthetase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C0M2_HYPNA rbh
2-acylglycerophosphoethanolamine acyltransferase/Acyl-[acyl-carrier-protein] synthetase {ECO:0000313|EMBL:ABI75576.1}; EC=2.3.1.40 {ECO:0000313|EMBL:ABI75576.1};; EC=6.2.1.20 {ECO:0000313|EMBL:ABI75576.1};; TaxID=228405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas neptunium (strain ATCC 15444).;"
SCNpilot_expt_1000_bf_scaffold_6735_curated_4
unknown

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comp(4163..4846)
DNA (684bp) protein (228aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6735_curated_5
Alteromonadaceae bacterium Bs02, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5469..5909
DNA (441bp) protein (147aa)
bacterioferritin n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4727C
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1500538 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae.;" source="Alteromonadaceae bacterium Bs02.;"
bfr; bacterioferritin
SCNpilot_expt_1000_bf_scaffold_6735_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5911..6567)
DNA (657bp) protein (219aa)
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33704.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J3CJN4_9BURK rbh
glutathione s-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18] rbh
SCNpilot_expt_1000_bf_scaffold_6735_curated_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6691..7368
DNA (678bp) protein (226aa)
intracellular PHB depolymerase, polyhydroxyalkanoate depolymerase
Intracellular PHB depolymerase, polyhydroxyalkanoate depolymerase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5F8_HYPSM
Intracellular PHB depolymerase, polyhydroxyalkanoate depolymerase {ECO:0000313|EMBL:CCB67067.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6735_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7377..7892
DNA (516bp) protein (172aa)
poly(3-hydroxybutyrate) depolymerase n=1 Tax=Xanthobacteraceae RepID=UPI00037B3528
polyhydroxyalkanoate depolymerase
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:ABS67380.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_6735_curated_9
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7952..8737)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348FD0A
Endonuclease {ECO:0000313|EMBL:EGY02512.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
S1/P1 nuclease
SCNpilot_expt_1000_bf_scaffold_6735_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8875..10530
DNA (1656bp) protein (552aa)
peptidase M23B rbh
Peptidase M23B n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTZ0_PARL1 rbh
Peptidase M23B {ECO:0000313|EMBL:ABS63373.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6735_curated_11
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10537..13140)
DNA (2604bp) protein (868aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
clpB; chaperone protein ClpB rbh
Chaperone protein ClpB n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QM69_METSZ rbh
Displaying 11 items

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