ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3482_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3482_curated_1
unknown

Not on your lists

comp(109..267)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_2
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

587..1756
DNA (1170bp) protein (390aa)
ldc; lysine (EC:4.1.1.17 4.1.1.18); K01581 ornithine decarboxylase [EC:4.1.1.17] rbh
Lysine n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMU5_RHOCS rbh
Lysine {ECO:0000313|EMBL:ACI98761.1}; EC=4.1.1.17 {ECO:0000313|EMBL:ACI98761.1};; EC=4.1.1.18 {ECO:0000313|EMBL:ACI98761.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_3
unknown

Not on your lists

2180..2743
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2782..4359)
DNA (1578bp) protein (526aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
peptide chain release factor 3; K02837 peptide chain release factor 3 rbh
Peptide chain release factor 3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH2_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_3482_curated_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4387..5550)
DNA (1164bp) protein (388aa)
Tax=BJP_08E140C01_Burkholderiales_65_30
Chromate transport protein ChrA n=1 Tax=Cronobacter universalis NCTC 9529 RepID=K8DLL7_9ENTR rbh
putative Chromate transport protein ChrA rbh
SCNpilot_expt_1000_bf_scaffold_3482_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5570..5911)
DNA (342bp) protein (114aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH0_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS62503.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_7
unknown

Not on your lists

6036..6596
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6633..7178
DNA (546bp) protein (182aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3J0_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:BAL07050.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_9
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7171..7821)
DNA (651bp) protein (217aa)
sensor histidine kinase DivJ; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
histidine protein kinase DivJ n=1 Tax=Caulobacter crescentus (strain NA1000 / CB15N) RepID=UPI000191DB5E
Histidine protein kinase DivJ; EC=2.7.13.3;; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_10
bacterium YEK0313, Bacteria

Not on your lists

comp(7769..8269)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037214B3
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
PAS/PAC sensor-containing diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_3482_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9219..10751
DNA (1533bp) protein (511aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTX9_9PROT
two component sensor kinase (EC:2.7.3.-); K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
SCNpilot_expt_1000_bf_scaffold_3482_curated_12
unknown

Not on your lists

11023..11277
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11307..12092)
DNA (786bp) protein (262aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRG6_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS62499.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12089..12430)
DNA (342bp) protein (114aa)
chromosomal replication initiator DnaA domain-containing protein
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI000371FEC3
Chromosomal replication initiator DnaA domain {ECO:0000313|EMBL:ABS62498.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_15
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12693..13190)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI0003764665
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABI65244.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_16
unknown

Not on your lists

13276..13626
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13815..14447)
DNA (633bp) protein (211aa)
superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBR2_NITMU
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_18
unknown

Not on your lists

14717..14938
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_19
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15006..15488)
DNA (483bp) protein (161aa)
Aminotransferase {ECO:0000313|EMBL:KJR66147.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative aminotransferase
Putative aminotransferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3P2_AZOL4
SCNpilot_expt_1000_bf_scaffold_3482_curated_20
unknown

Not on your lists

15941..16228
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_21
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16437..17276
DNA (840bp) protein (280aa)
Tax=BJP_08E140C01_Xanthomonadales_64_42
Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KQ08_9GAMM
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3482_curated_22
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17260..18105)
DNA (846bp) protein (282aa)
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:GAK46140.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
PREDICTED: beta-lactamase-like protein 2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13E04
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
SCNpilot_expt_1000_bf_scaffold_3482_curated_23
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18249..19109
DNA (861bp) protein (287aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3C7_CAUCN
Uncharacterized protein {ECO:0000313|EMBL:AAK25063.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_24
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19063..19392
DNA (330bp) protein (110aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GWM3_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ABZ69793.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_3482_curated_25
unknown

Not on your lists

19830..20111
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3482_curated_26

Not on your lists

20275..20655
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN46695.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQL4_PARL1
SCNpilot_expt_1000_bf_scaffold_3482_curated_27
bacterium YEK0313, Bacteria

Not on your lists

comp(20716..20934)
DNA (219bp) protein (73aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
trpS; aminoacyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
tryptophanyl-tRNA synthetase n=1 Tax=Kaistia granuli RepID=UPI0003770791
SCNpilot_expt_1000_bf_scaffold_3482_curated_28
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20973..21590)
DNA (618bp) protein (206aa)
Tryptophan--tRNA ligase n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W695_9CAUL
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
SCNpilot_expt_1000_bf_scaffold_3482_curated_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21718..24519)
DNA (2802bp) protein (934aa)
PII uridylyl-transferase; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ67_PARL1 rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 1
SCNpilot_expt_1000_bf_scaffold_3482_curated_30
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24563..25132)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003604C5B
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
sodC; superoxide dismutase (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Displaying items 1-30 of 36 in total

View Taxonomy