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SCNpilot_expt_1000_bf_scaffold_8703_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8703_curated_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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663..1634
DNA (972bp) protein (324aa)
Uncharacterized protein {ECO:0000313|EMBL:KGI77216.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
fimbrial biogenesis outer membrane usher protein; K07347 outer membrane usher protein
Fimbrial biogenesis outer membrane usher protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SQ27_STRM5
SCNpilot_expt_1000_bf_scaffold_8703_curated_2
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2171..3487
DNA (1317bp) protein (439aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CDO60106.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Signal transduction histidine kinase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AFW0_9PROT rbh
Signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
SCNpilot_expt_1000_bf_scaffold_8703_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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3554..4264
DNA (711bp) protein (237aa)
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ38_PARL1
SCNpilot_expt_1000_bf_scaffold_8703_curated_4
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4261..4968
DNA (708bp) protein (236aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
PhoB family transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB rbh
Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QH48_BRESC rbh
SCNpilot_expt_1000_bf_scaffold_8703_curated_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5059..5538)
DNA (480bp) protein (160aa)
glutathione peroxidase (EC:1.11.1.9); K00432 glutathione peroxidase [EC:1.11.1.9]
Glutathione peroxidase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VDQ4_SPHWW
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_8703_curated_6
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(5650..6114)
DNA (465bp) protein (155aa)
GcrA cell cycle regulator {ECO:0000313|EMBL:KIF25106.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
global cell cycle regulator GcrA; K13583 GcrA cell cycle regulator
GcrA cell cycle regulator n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A536B8
SCNpilot_expt_1000_bf_scaffold_8703_curated_7
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6340..7539
DNA (1200bp) protein (400aa)
acetylornithine aminotransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003642A9B rbh
acetylornithine and succinylornithine aminotransferase; K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] rbh
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_8703_curated_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7536..8114
DNA (579bp) protein (193aa)
ornithine carbamoyltransferase
Ornithine carbamoyltransferase, catabolic n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UC41_METS4
Ornithine carbamoyltransferase, catabolic {ECO:0000256|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Displaying 8 items

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