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SCNpilot_expt_1000_bf_scaffold_8287_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8287_curated_1
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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1..585
DNA (585bp) protein (195aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000256|SAAS:SAAS00018413};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
porphobilinogen deaminase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A25F22
hemC; hydroxymethylbilane synthase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
SCNpilot_expt_1000_bf_scaffold_8287_curated_2
unknown

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comp(688..876)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8287_curated_3
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(922..1848)
DNA (927bp) protein (309aa)
lysophospholipase
Lysophospholipase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2VZF7_MAGSA
Lysophospholipase {ECO:0000313|EMBL:BAE53018.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_expt_1000_bf_scaffold_8287_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1857..3107)
DNA (1251bp) protein (417aa)
Na+ dependent nucleoside transporter {ECO:0000313|EMBL:GAK45215.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family rbh
Na+ dependent nucleoside transporter domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS07_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_8287_curated_5
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3214..4401
DNA (1188bp) protein (396aa)
Acyltransferase 3 {ECO:0000313|EMBL:KGJ90150.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (Vibrio psychroerythus).;"
hypothetical protein n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEFD45
acyltransferase 3
SCNpilot_expt_1000_bf_scaffold_8287_curated_6
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4425..5336
DNA (912bp) protein (304aa)
HlyD family secretion protein rbh
HlyD family secretion protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGS9_PHEZH rbh
HlyD family secretion protein {ECO:0000313|EMBL:ACG77295.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_8287_curated_7
unknown

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5832..6086
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8287_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6097..6615)
DNA (519bp) protein (173aa)
phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
phosphohistidine phosphatase n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035C3654
Putative phosphohistidine phosphatase, SixA {ECO:0000313|EMBL:ADJ23256.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_8287_curated_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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6972..8165
DNA (1194bp) protein (398aa)
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:GAK45552.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036D58BC rbh
O-succinylhomoserine sulfhydrylase; K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_8287_curated_10
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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8176..8613
DNA (438bp) protein (146aa)
Tax=GWB2_Ignavibacteria_35_6b_curated
redox protein, regulator of disulfide bond formation
Putative redox protein, regulator of disulfide bond formation n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNF9_SINAD
SCNpilot_expt_1000_bf_scaffold_8287_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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8829..9266
DNA (438bp) protein (146aa)
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
apaG; hypothetical protein; K06195 ApaG protein
Protein ApaG n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IY67_POLGS
SCNpilot_expt_1000_bf_scaffold_8287_curated_12
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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9331..9876
DNA (546bp) protein (182aa)
Tax=BJP_IG2102_Syntrophobacterales_60_12
folE; GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 n=2 Tax=Rhodospirillum rubrum RepID=G2T6Z0_RHORU
SCNpilot_expt_1000_bf_scaffold_8287_curated_13
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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9880..11025
DNA (1146bp) protein (382aa)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
argE3; acetylornithine deacetylase (EC:3.5.1.16); K01438 acetylornithine deacetylase [EC:3.5.1.16] rbh
Putative acetylornithine deacetylase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHK4_BORPD rbh
SCNpilot_expt_1000_bf_scaffold_8287_curated_14
unknown

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comp(10964..11191)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8287_curated_15
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11321..12025)
DNA (705bp) protein (235aa)
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Hsp33-like chaperonin n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DF97_9RHIZ
Hsp33 protein; K04083 molecular chaperone Hsp33
Displaying 15 items

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